Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 8.2e-258 893.3 470 100.0
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 6.5e-239 830.5 470 92.3
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 1.0e-231 806.6 467 90.4
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 6.8e-228 793.9 463 89.0
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.2e-227 793.1 463 89.8
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.3e-226 789.6 470 89.4
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 3.7e-226 788.1 463 88.8
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 4.9e-226 787.7 463 89.4
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 4.9e-226 787.7 463 89.4
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 5.0e-223 777.7 463 88.3
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 9.2e-217 756.9 470 84.9
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 8.6e-215 750.4 432 92.6
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 8.9e-204 713.8 434 87.3
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 5.5e-169 598.2 397 77.8
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 3.9e-151 538.9 475 61.5
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 4.3e-150 535.4 468 60.0
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.5e-147 526.9 468 60.0
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.3e-146 523.9 470 59.1
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 3.8e-146 522.3 472 61.0
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.6e-144 516.9 468 59.2
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 2.1e-144 516.5 468 59.4
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.1e-144 516.5 476 59.5
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 2.1e-144 516.5 477 59.1
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 3.6e-144 515.8 465 58.3
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.4e-143 513.8 473 59.2
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 3.9e-143 512.3 485 58.4
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 8.8e-143 511.1 467 58.7
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.1e-142 510.8 465 60.0
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.2e-141 506.5 474 58.0
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 2.8e-141 506.1 465 57.2
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.1e-140 504.2 474 57.0
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.4e-140 503.8 477 57.4
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.8e-140 503.4 474 57.2
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.1e-140 502.3 473 55.4
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 4.5e-139 498.8 456 57.9
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 5.9e-139 498.4 475 55.4
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 7.7e-139 498.0 473 55.0
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.7e-138 496.9 473 55.4
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 5.0e-138 495.4 460 57.2
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.5e-138 495.0 471 55.0
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.4e-137 493.8 467 57.4
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 3.2e-137 492.7 479 55.1
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 5.5e-137 491.9 464 57.5
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 2.0e-134 483.4 470 54.3
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.6e-134 483.0 465 55.3
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 3.3e-134 482.6 466 55.2
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 5.7e-134 481.9 473 55.4
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.2e-133 478.0 473 55.0
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 8.2e-133 478.0 468 55.8
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.1e-132 477.6 471 56.1
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.4e-132 477.2 471 55.6
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 5.3e-132 475.3 466 54.5
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.2e-131 474.2 475 54.9
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.5e-131 472.6 472 52.5
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 4.5e-131 472.2 463 55.5
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.7e-130 470.3 458 57.6
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.9e-130 469.5 429 58.7
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.8e-130 469.2 476 52.5
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 8.8e-127 458.0 466 53.4
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.3e-125 454.1 410 59.3
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 2.2e-125 453.4 474 55.7
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 3.7e-125 452.6 469 55.0
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.1e-124 451.1 474 50.8
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 5.3e-124 448.7 472 54.9
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 7.0e-124 448.4 440 58.0
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 2.0e-123 446.8 473 50.7
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 3.5e-123 446.0 473 50.7
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 2.2e-122 443.4 398 60.8
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 2.9e-122 443.0 475 52.4
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 1.2e-118 431.0 379 60.2
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.5e-118 430.6 391 58.3
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 5.7e-118 428.7 471 52.0
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 7.5e-118 428.3 477 50.5
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 1.4e-116 424.1 376 60.1
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.0e-114 417.9 552 43.8
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.9e-114 416.4 464 48.3
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.1e-113 414.5 506 47.8
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 9.8e-110 401.4 392 52.3
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.7e-109 399.4 532 46.8
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 6.3e-109 398.7 475 48.0
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 6.3e-109 398.7 390 57.7
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.5e-107 392.9 422 50.0
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.5e-107 392.9 466 48.5
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 2.3e-106 390.2 480 45.0
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 6.1e-104 382.1 483 46.8
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.1e-100 371.3 377 53.3
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 3.2e-100 369.8 411 48.4
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 5.4e-100 369.0 515 46.4
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.0e-98 364.8 446 48.2
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 5.6e-97 359.0 419 50.1
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 6.2e-96 355.5 491 43.4
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 6.2e-96 355.5 290 62.1
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.4e-95 354.4 469 45.8
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.2e-94 351.3 322 56.5
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 9.8e-94 348.2 355 53.5
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 2.7e-91 340.1 350 52.3
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 8.6e-90 335.1 413 47.0
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.0e-86 323.9 323 55.7
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 7.5e-86 322.0 343 51.6
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.3e-85 321.2 296 56.8
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.7e-85 320.9 374 50.5
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.4e-84 317.0 291 54.3
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 3.0e-82 310.1 389 47.3
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 5.6e-81 305.8 276 57.2
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.8e-80 303.5 169 88.2
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 4.7e-80 302.8 446 41.9
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.2e-76 289.7 261 54.8
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 8.1e-72 275.4 382 44.0
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.4e-70 269.6 254 53.5
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.2e-69 267.3 521 36.5
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 8.4e-69 265.4 319 49.2
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.1e-68 265.0 223 60.5
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.3e-66 257.3 312 49.4
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.4e-60 238.0 264 49.2
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 8.7e-58 228.8 296 43.9
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 2.2e-45 187.6 180 58.9
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 6.5e-45 186.0 219 52.1
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.1e-42 176.4 453 30.7
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 8.7e-42 175.6 559 28.8
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 4.6e-35 153.3 592 28.5
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.1e-33 148.7 159 48.4
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.6e-30 137.5 144 50.7
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 5.9e-30 136.3 373 31.4
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.0e-29 135.6 106 60.4
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-28 132.1 164 49.4
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.7e-21 108.2 155 43.9
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 8.5e-21 105.9 116 52.6
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 9.4e-20 102.4 149 44.3
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 3.6e-19 100.5 113 51.3
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.1e-19 99.8 63 79.4
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 7.4e-17 92.8 83 56.6
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 5.3e-15 86.7 126 38.9
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.5e-14 84.0 75 56.0
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.5e-14 84.0 75 56.0
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.7e-14 82.8 75 54.7
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-13 79.7 75 54.7
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.5e-12 78.6 54 70.4
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 1.0e-10 72.4 112 40.2
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 2.3e-10 71.2 52 63.5
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 4.0e-10 70.5 78 51.3
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 4.0e-10 70.5 81 50.6
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 5.2e-10 70.1 125 35.2


User provided reference genes

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