Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 3.7e-126 454.9 234 100.0
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 9.5e-122 440.3 234 95.3
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 2.9e-118 428.7 234 91.9
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 5.4e-117 424.5 234 91.0
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.0e-112 410.2 234 87.6
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 5.2e-112 407.9 234 88.0
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 3.7e-110 401.7 234 85.5
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 1.4e-109 399.8 234 87.6
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 2.7e-108 395.6 234 84.6
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 9.5e-106 387.1 234 82.9
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 9.5e-106 387.1 234 82.9
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 6.2e-105 384.4 228 84.6
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 4.0e-104 381.7 235 82.6
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 5.2e-104 381.3 234 82.1
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 5.8e-103 377.9 228 82.5
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.9e-102 375.6 207 90.3
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 3.7e-102 375.2 229 84.3
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 4.1e-101 371.7 226 84.1
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 2.1e-100 369.4 235 80.9
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.3e-98 362.1 234 79.1
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 9.5e-98 360.5 224 83.5
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.7e-91 339.7 235 74.5
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.3e-91 339.3 235 74.5
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 4.3e-90 335.1 236 70.8
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 4.3e-90 335.1 221 75.1
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.3e-90 334.3 235 74.0
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 9.6e-90 334.0 234 72.2
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.2e-89 333.6 236 74.2
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.6e-89 333.2 234 70.1
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.1e-89 332.8 236 73.3
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.8e-89 332.4 228 75.4
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.1e-88 330.5 235 73.2
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.1e-88 330.5 234 74.8
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.4e-88 330.1 234 73.1
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 6.9e-88 327.8 235 71.1
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 8.9e-88 327.4 234 68.8
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.5e-87 326.6 235 71.1
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.0e-87 326.2 234 67.9
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.6e-87 325.9 219 73.5
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.4e-87 325.5 234 73.1
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 9.9e-87 323.9 213 74.2
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 9.9e-87 323.9 234 72.6
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 2.9e-86 322.4 258 64.7
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 8.4e-86 320.9 215 73.0
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.4e-85 318.2 228 70.6
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.4e-85 318.2 228 70.2
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 5.4e-85 318.2 225 71.6
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 5.4e-85 318.2 227 70.5
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 7.1e-85 317.8 214 74.8
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 7.1e-85 317.8 228 70.2
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 9.3e-85 317.4 235 70.6
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.7e-84 315.8 216 72.7
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 3.5e-84 315.5 224 71.0
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 4.6e-84 315.1 235 68.9
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 4.6e-84 315.1 213 75.6
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 6.0e-84 314.7 224 71.0
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 6.0e-84 314.7 235 72.3
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.3e-83 313.5 236 67.8
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.3e-83 313.5 235 68.9
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.7e-83 313.2 216 74.1
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.3e-83 312.8 219 72.1
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 3.0e-83 312.4 220 71.4
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 5.1e-83 311.6 219 71.2
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 5.1e-83 311.6 235 69.8
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 6.6e-83 311.2 231 68.8
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 6.6e-83 311.2 235 67.2
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 8.7e-83 310.8 214 70.6
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.1e-82 310.5 235 66.8
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.5e-82 310.1 215 70.7
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.5e-82 310.1 219 70.8
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.9e-82 309.7 222 72.5
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 3.3e-82 308.9 224 73.2
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 7.3e-82 307.8 292 59.6
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 7.3e-82 307.8 235 67.2
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 7.3e-82 307.8 235 68.1
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 9.6e-82 307.4 254 65.4
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 9.6e-82 307.4 235 68.5
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.3e-81 307.0 235 66.4
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.3e-81 307.0 235 68.5
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 1.6e-81 306.6 235 67.7
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 2.8e-81 305.8 235 66.0
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 4.8e-81 305.1 223 69.5
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 4.8e-81 305.1 220 69.5
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.1e-80 303.9 223 70.9
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.4e-80 303.5 217 71.0
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.1e-80 302.4 203 75.4
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.1e-80 302.4 203 75.4
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.5e-79 300.1 237 64.1
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 2.0e-79 299.7 216 71.8
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 3.4e-79 298.9 223 69.1
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 3.4e-79 298.9 236 64.4
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 4.5e-79 298.5 236 65.3
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 9.9e-79 297.4 216 67.1
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.2e-78 296.2 209 68.4
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 3.8e-78 295.4 214 68.7
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.4e-78 294.7 234 64.5
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.9e-77 293.1 216 68.1
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.9e-77 293.1 256 62.1
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 2.4e-77 292.7 236 63.6
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.2e-77 292.0 218 66.5
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 9.3e-77 290.8 235 66.0
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 9.3e-77 290.8 217 68.2
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.2e-76 290.4 221 68.3
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-76 290.0 236 63.1
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 2.1e-76 289.7 217 66.8
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 2.7e-76 289.3 218 68.3
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 1.8e-75 286.6 264 57.6
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 3.0e-75 285.8 211 70.6
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 8.7e-75 284.3 234 64.5
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.3e-73 280.4 217 65.0
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 4.8e-73 278.5 242 60.7
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 8.1e-73 277.7 210 65.2
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.1e-72 277.3 217 66.8
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 9.0e-72 274.2 235 63.0
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.5e-71 273.5 221 61.5
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 3.4e-71 272.3 235 62.6
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 2.2e-70 269.6 168 79.8
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.9e-70 269.2 308 49.4
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.9e-70 268.5 234 62.4
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.6e-68 263.5 198 65.7
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.0e-68 261.5 162 78.4
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.1e-66 257.3 170 75.3
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.9e-66 256.5 235 60.0
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 9.3e-61 237.7 223 59.6
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 3.5e-60 235.7 214 59.8
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.0e-59 234.2 228 58.8
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 5.1e-59 231.9 223 52.5
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 3.3e-58 229.2 231 54.1
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 5.7e-58 228.4 215 57.7
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.1e-56 222.6 204 59.3
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 4.1e-56 222.2 174 58.6
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 5.3e-56 221.9 120 85.8
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 5.9e-55 218.4 218 54.6
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.0e-54 217.6 161 66.5
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 2.9e-54 216.1 121 84.3
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.6e-52 210.3 245 45.7
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 3.6e-52 209.1 176 67.0
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 4.6e-52 208.8 172 65.7
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.3e-51 207.2 117 81.2
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.8e-51 206.8 165 63.6
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.8e-51 206.8 145 73.1
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 1.6e-49 200.3 104 93.3
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 5.0e-46 188.7 120 73.3
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 1.7e-41 173.7 213 47.4
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 5.3e-40 168.7 227 44.1
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.5e-39 165.6 292 38.0
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 2.2e-38 163.3 137 61.3
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 4.7e-36 155.6 188 46.3
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 3.0e-35 152.9 188 51.1
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.9e-35 152.5 177 49.7
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 3.2e-29 132.9 81 77.8
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.6e-28 129.4 126 60.3
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.1e-24 117.9 166 44.0
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.4e-24 116.7 158 47.5
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 2.4e-24 116.7 75 74.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 7.7e-23 111.7 67 77.6
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 5.0e-22 109.0 81 69.1
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 6.5e-22 108.6 114 52.6
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.1e-21 107.8 88 67.0
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 9.4e-21 104.8 105 53.3
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.6e-20 104.0 59 84.7
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 6.1e-20 102.1 67 74.6
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 1.8e-19 100.5 105 51.4
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.3e-17 94.4 241 32.4
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 8.3e-17 91.7 167 37.1
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 4.1e-16 89.4 107 52.3
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 4.5e-15 85.9 86 58.1
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.0e-14 84.7 162 36.4
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.2e-12 77.8 182 35.2
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.4e-11 74.3 79 50.6
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 2.8e-09 66.6 52 69.2
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 6.3e-09 65.5 46 65.2
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 5.9e-07 58.9 45 57.8


User provided reference genes

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