Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 6.9e-260 900.2 481 100.0
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 3.9e-239 831.2 481 92.7
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 1.2e-224 783.1 482 88.2
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 1.2e-224 783.1 488 87.5
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 6.7e-207 724.2 486 82.5
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 4.4e-206 721.5 483 83.0
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 1.3e-205 719.9 483 82.8
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 6.3e-205 717.6 486 82.1
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 3.0e-178 629.0 491 70.7
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 4.6e-171 605.1 492 68.7
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 4.9e-141 505.4 493 58.8
Carub.0007s2300 Capsella rubella HOM05D006050 ORTHO05D007457 2.8e-136 489.6 300 87.7
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 6.9e-135 485.0 446 61.9
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 1.5e-134 483.8 453 60.7
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 2.6e-134 483.0 452 60.6
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 1.9e-132 476.9 460 60.0
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 7.1e-132 474.9 506 55.1
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 1.0e-130 471.1 452 59.1
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 2.3e-130 469.9 485 57.1
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 6.7e-130 468.4 497 56.5
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 1.1e-129 467.6 389 65.6
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 2.1e-128 463.4 462 56.9
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 8.2e-128 461.5 502 55.8
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 5.3e-127 458.8 470 55.7
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 2.6e-126 456.4 455 58.0
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 4.5e-126 455.7 502 53.4
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 4.5e-126 455.7 505 54.1
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 4.5e-126 455.7 484 55.4
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 6.5e-125 451.8 505 53.7
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 8.4e-125 451.4 453 58.7
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 1.1e-124 451.1 515 53.8
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 2.5e-124 449.9 463 57.7
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 1.6e-123 447.2 418 60.0
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 3.5e-123 446.0 475 56.4
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 7.9e-123 444.9 487 56.1
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 1.8e-122 443.7 464 55.8
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 3.0e-122 443.0 445 58.2
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 5.1e-122 442.2 457 54.9
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 3.3e-121 439.5 464 55.8
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 3.7e-120 436.0 450 55.1
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 3.7e-120 436.0 451 56.5
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 6.3e-120 435.3 469 55.4
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 6.3e-120 435.3 477 53.5
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 6.3e-120 435.3 467 56.1
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 3.1e-119 433.0 370 64.9
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 6.9e-119 431.8 470 54.7
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 1.2e-118 431.0 466 55.8
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 2.6e-118 429.9 498 52.2
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 5.9e-118 428.7 494 52.6
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 5.9e-118 428.7 494 52.6
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 1.0e-117 427.9 448 56.2
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 1.1e-116 424.5 506 51.8
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 9.4e-116 421.4 450 54.0
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 4.6e-115 419.1 526 51.1
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 4.6e-115 419.1 446 55.4
CARHR225070 Cardamine hirsuta HOM05D006050 ORTHO05D007457 7.9e-115 418.3 271 83.8
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 3.9e-114 416.0 431 55.5
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 5.1e-114 415.6 424 57.8
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.0e-113 413.7 474 53.6
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 3.3e-113 412.9 474 53.6
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 7.4e-113 411.8 374 60.2
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 2.4e-111 406.8 460 52.4
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 2.4e-111 406.8 460 52.2
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 2.0e-110 403.7 455 52.3
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 2.6e-110 403.3 452 52.9
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 2.6e-110 403.3 453 53.0
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 1.7e-109 400.6 511 49.3
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 9.4e-108 394.8 428 53.7
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 1.2e-107 394.4 502 50.0
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 3.0e-106 389.8 457 51.4
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 1.7e-104 384.0 514 48.8
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 2.8e-104 383.3 338 63.9
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 4.8e-104 382.5 406 56.2
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 3.1e-103 379.8 392 58.4
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 2.0e-102 377.1 479 50.5
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 7.7e-102 375.2 524 47.9
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 1.3e-101 374.4 410 55.9
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 6.1e-99 365.5 453 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 2.6e-97 360.1 373 56.0
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 5.7e-97 359.0 358 53.9
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 4.8e-96 355.9 425 51.3
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 7.7e-94 348.6 457 44.9
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 5.5e-92 342.4 194 95.9
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 5.5e-92 342.4 346 53.8
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 9.4e-92 341.7 406 50.7
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 9.4e-92 341.7 389 50.1
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 3.0e-90 336.7 326 58.3
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 9.8e-89 331.6 441 46.9
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.9e-84 317.4 564 39.4
FvH4_3g05710 Fragaria vesca HOM05D006050 ORTHO05D007457 1.2e-83 314.7 363 51.2
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 8.0e-75 285.4 166 91.6
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 3.4e-73 280.0 357 46.8
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 8.6e-69 265.4 213 66.7
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 2.9e-64 250.4 446 41.7
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 4.7e-59 233.0 194 65.5
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 6.8e-58 229.2 166 71.7
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 1.6e-51 208.0 274 47.4
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.4e-50 204.9 271 46.5
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.1e-47 195.3 332 41.6
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 1.1e-47 195.3 315 42.2
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 1.9e-47 194.5 299 42.5
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 1.1e-44 185.3 270 42.2
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 3.6e-43 180.3 327 39.1
PGSC0003DMG402021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 5.4e-39 166.4 179 52.5
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 2.3e-37 161.0 123 67.5
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 3.0e-37 160.6 137 65.7
SEGI_21633 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 1.1e-36 158.7 150 54.7
Gohir.D10G040800 Gossypium hirsutum HOM05D006050 ORTHO05D007457 3.3e-36 157.1 178 48.3
Gohir.A10G040000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 4.3e-36 156.8 178 48.3
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 5.8e-33 146.4 359 35.1
DCAR_029765 Daucus carota HOM05D006050 ORTHO05D007457 2.2e-32 144.4 174 50.6
Pp3c6_19460 Physcomitrium patens HOM05D006050 ORTHO05D007457 2.9e-32 144.1 187 46.0
Zm00001eb120180 Zea mays HOM05D006050 ORTHO05D007457 1.1e-31 142.1 295 37.6
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 2.4e-31 141.0 279 36.2
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.2e-30 138.7 144 53.5
FAN11G0378 Fragaria x ananassa HOM05D006050 ORTHO05D007457 3.6e-27 127.1 144 51.4
Mapoly0042s0029 Marchantia polymorpha HOM05D006050 ORTHO05D007457 1.5e-25 121.7 154 42.9
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 1.1e-23 115.5 105 62.9
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 9.3e-23 112.5 78 74.4
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 2.1e-22 111.3 255 34.5
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 6.2e-19 99.8 226 32.3
CSS0043541 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.0e-16 92.4 77 63.6
DCAR_011844 Daucus carota HOM05D006050 ORTHO05D007457 1.9e-12 78.2 89 50.6
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.3e-11 75.5 61 60.7
CSS0030855 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 7.9e-06 56.2 45 55.6
CSS0036908 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 7.9e-06 56.2 45 55.6


User provided reference genes

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