Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G35920 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 4.2e-104 381.3 188 100.0
AL1G36940 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 1.7e-97 359.4 177 99.4
AL1G36880 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 4.0e-62 241.9 175 69.7
AL1G37000 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 2.6e-61 239.2 172 69.8
AT1G23201 Arabidopsis thaliana HOM05D014944 ORTHO05D017385 4.7e-55 218.4 182 62.6
AL1G36930 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 1.4e-54 216.9 117 89.7
AL7G35910 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 1.4e-54 216.9 117 89.7
Carub.0001s2278 Capsella rubella HOM05D014944 ORTHO05D017385 1.1e-30 137.5 179 45.3
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 7.1e-27 124.8 195 39.5
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 1.6e-26 123.6 215 40.5
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 1.7e-20 103.6 181 36.5
AL1G24250 Arabidopsis lyrata HOM05D014944 ORTHO05D007107 3.8e-20 102.4 185 35.7
AL1G24200 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 1.1e-19 100.9 185 36.2
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 1.6e-18 97.1 166 31.9
C08p16700 Brassica napus HOM05D015260 ORTHO05D003858 2.3e-17 93.2 208 32.2
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 5.1e-17 92.0 161 36.0
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 6.6e-17 91.7 152 34.2
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 4.3e-16 89.0 162 35.2
C08p16290 Brassica napus HOM05D015260 ORTHO05D003858 3.6e-15 85.9 208 30.3
C08p19630 Brassica napus HOM05D015260 ORTHO05D003858 1.1e-14 84.3 211 28.4
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 1.8e-14 83.6 176 34.7
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 1.8e-14 83.6 188 34.0
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.4e-14 83.2 134 38.1
BcaB03g13129 Brassica carinata HOM05D015260 ORTHO05D003858 1.2e-13 80.9 213 28.2
AL1G24370 Arabidopsis lyrata HOM05D011464 ORTHO05D014025 2.0e-13 80.1 158 38.6
BcaC07g38700 Brassica carinata HOM05D015260 ORTHO05D003858 2.0e-13 80.1 176 31.2
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.7e-12 77.0 127 35.4
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 2.9e-12 76.3 178 33.7
BraA08t35148Z Brassica rapa HOM05D015260 ORTHO05D003858 6.4e-12 75.1 152 31.6
A08p32250 Brassica napus HOM05D015260 ORTHO05D003858 1.1e-11 74.3 149 31.5
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 5.4e-11 72.0 67 52.2
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 7.1e-11 71.6 67 52.2
BolC8t49252H Brassica oleracea HOM05D015260 ORTHO05D003858 1.2e-10 70.9 148 31.1
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 1.6e-10 70.5 67 50.7
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 1.6e-10 70.5 67 50.7
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 1.6e-10 70.5 67 50.7
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 1.6e-10 70.5 67 50.7
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 1.6e-10 70.5 67 50.7
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 4.6e-10 68.9 67 49.3
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 1.3e-09 67.4 67 49.3
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 1.3e-09 67.4 67 46.3
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 2.3e-09 66.6 67 46.3
BraA09t41571Z Brassica rapa HOM05D011464 ORTHO05D014025 2.3e-09 66.6 183 27.9
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 2.3e-09 66.6 67 47.8
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 3.9e-09 65.9 67 46.3
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 3.9e-09 65.9 67 46.3
AT5G02210 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 3.9e-09 65.9 193 31.6
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 3.9e-09 65.9 91 39.6
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 6.7e-09 65.1 62 50.0
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.1e-08 64.3 67 44.8
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 1.1e-08 64.3 82 37.8
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.1e-08 64.3 67 44.8
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.1e-08 64.3 67 47.8
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 1.5e-08 63.9 78 42.3
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 1.5e-08 63.9 67 46.3
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.9e-08 63.5 67 44.8
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 1.9e-08 63.5 67 44.8
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 2.5e-08 63.2 67 43.3
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.5e-08 63.2 97 38.1
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.5e-08 63.2 62 45.2
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 2.5e-08 63.2 67 43.3
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 3.3e-08 62.8 71 45.1
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 4.3e-08 62.4 67 44.8
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 4.3e-08 62.4 66 45.5
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 4.3e-08 62.4 67 44.8
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 4.3e-08 62.4 67 46.3
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 4.3e-08 62.4 67 43.3
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 4.3e-08 62.4 83 39.8
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 5.6e-08 62.0 67 44.8
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 5.6e-08 62.0 67 44.8
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 5.6e-08 62.0 67 43.3
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 5.6e-08 62.0 67 44.8
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 5.6e-08 62.0 67 43.3
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 7.4e-08 61.6 62 45.2
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 7.4e-08 61.6 62 45.2
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 9.6e-08 61.2 79 41.8
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 9.6e-08 61.2 67 43.3
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 9.6e-08 61.2 67 44.8
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 1.3e-07 60.8 62 43.5
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-07 60.8 71 40.8
A09p62070 Brassica napus HOM05D011464 ORTHO05D014025 1.3e-07 60.8 185 27.0
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 1.3e-07 60.8 71 40.8
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 1.3e-07 60.8 82 36.6
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 1.3e-07 60.8 62 45.2
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 1.3e-07 60.8 67 44.8
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 1.3e-07 60.8 67 44.8
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 1.3e-07 60.8 67 43.3
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 1.6e-07 60.5 67 43.3
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 2.1e-07 60.1 62 43.5
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 2.1e-07 60.1 62 45.2
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 2.1e-07 60.1 62 45.2
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 2.1e-07 60.1 62 45.2
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 2.1e-07 60.1 67 44.8
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 2.1e-07 60.1 67 40.3
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 2.8e-07 59.7 73 43.8
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 2.8e-07 59.7 67 41.8
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 2.8e-07 59.7 62 43.5
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 2.8e-07 59.7 68 42.6
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 3.7e-07 59.3 62 43.5
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 3.7e-07 59.3 62 45.2
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 3.7e-07 59.3 67 41.8
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 3.7e-07 59.3 67 43.3
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 4.8e-07 58.9 67 41.8
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 4.8e-07 58.9 71 45.1
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 4.8e-07 58.9 62 45.2
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 4.8e-07 58.9 67 43.3
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 4.8e-07 58.9 67 41.8
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 6.2e-07 58.5 62 43.5
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 6.2e-07 58.5 68 41.2
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 6.2e-07 58.5 58 44.8
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 6.2e-07 58.5 67 43.3
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 8.1e-07 58.2 192 27.1
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.1e-06 57.8 61 45.9
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.1e-06 57.8 64 48.4
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.1e-06 57.8 64 48.4
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.1e-06 57.8 64 48.4
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.1e-06 57.8 64 48.4
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 1.1e-06 57.8 67 41.8
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 1.4e-06 57.4 61 44.3
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 1.4e-06 57.4 67 40.3
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.4e-06 57.4 67 38.8
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 1.8e-06 57.0 67 41.8
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.8e-06 57.0 67 41.8
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.8e-06 57.0 67 41.8
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.8e-06 57.0 67 41.8
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 1.8e-06 57.0 67 41.8
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 2.4e-06 56.6 67 38.8
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 2.4e-06 56.6 61 45.9
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 2.4e-06 56.6 67 41.8
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.4e-06 56.6 67 38.8
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 3.1e-06 56.2 67 41.8
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 3.1e-06 56.2 62 41.9
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 3.1e-06 56.2 67 41.8
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 3.1e-06 56.2 79 36.7
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 4.0e-06 55.8 68 38.2
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 4.0e-06 55.8 67 40.3
AL1G30590 Arabidopsis lyrata HOM05D014411 ORTHO05D015382 5.3e-06 55.5 95 35.8
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 5.3e-06 55.5 63 41.3
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 5.3e-06 55.5 62 38.7
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 5.3e-06 55.5 62 40.3
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 5.3e-06 55.5 70 38.6
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 6.9e-06 55.1 75 40.0
AL4G42070 Arabidopsis lyrata HOM05D011464 ORTHO05D014025 6.9e-06 55.1 72 41.7
BolC1t01515H Brassica oleracea HOM05D012650 ORTHO05D027640 6.9e-06 55.1 125 28.8
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 6.9e-06 55.1 63 41.3
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 6.9e-06 55.1 67 37.3
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 6.9e-06 55.1 80 36.2
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 6.9e-06 55.1 61 41.0
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 6.9e-06 55.1 61 42.6
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 9.0e-06 54.7 63 41.3
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 9.0e-06 54.7 62 40.3
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 9.0e-06 54.7 67 37.3
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 9.0e-06 54.7 67 37.3
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 9.0e-06 54.7 61 42.6


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