Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G35910 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 6.1e-70 267.3 130 100.0
AL1G36930 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 2.0e-65 252.3 130 95.4
AL1G36940 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 1.2e-60 236.5 130 88.5
AL7G35920 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 5.5e-55 217.6 117 89.7
AL1G36880 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 2.7e-41 172.2 129 67.4
AL1G37000 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 7.8e-41 170.6 129 66.7
AT1G23201 Arabidopsis thaliana HOM05D014944 ORTHO05D017385 8.0e-38 160.6 131 61.8
Carub.0001s2278 Capsella rubella HOM05D014944 ORTHO05D017385 1.3e-24 116.7 132 48.5
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.9e-18 96.3 119 42.0
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 2.5e-15 85.9 135 32.6
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 6.2e-14 81.3 132 37.1
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 1.8e-13 79.7 126 38.9
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 3.4e-12 75.5 129 34.9
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 5.8e-12 74.7 132 34.1
AL1G24200 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 1.3e-11 73.6 125 35.2
C08p16700 Brassica napus HOM05D015260 ORTHO05D003858 1.7e-11 73.2 120 34.2
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 6.4e-11 71.2 124 36.3
AL1G30590 Arabidopsis lyrata HOM05D014411 ORTHO05D015382 8.4e-11 70.9 118 39.0
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.4e-10 70.1 99 40.4
BcaC07g38700 Brassica carinata HOM05D015260 ORTHO05D003858 2.1e-09 66.2 120 30.8
C08p16290 Brassica napus HOM05D015260 ORTHO05D003858 2.1e-09 66.2 120 30.8
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 2.7e-09 65.9 94 37.2
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 3.5e-09 65.5 81 42.0
C08p19630 Brassica napus HOM05D015260 ORTHO05D003858 4.6e-09 65.1 123 30.1
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 6.0e-09 64.7 80 42.5
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 6.0e-09 64.7 80 42.5
BraA08t35148Z Brassica rapa HOM05D015260 ORTHO05D003858 7.8e-09 64.3 117 31.6
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 7.8e-09 64.3 67 46.3
AL1G24250 Arabidopsis lyrata HOM05D014944 ORTHO05D007107 1.0e-08 63.9 118 32.2
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 1.7e-08 63.2 67 44.8
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 1.7e-08 63.2 67 44.8
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 1.7e-08 63.2 67 44.8
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 1.7e-08 63.2 67 46.3
BcaC07g41566 Brassica carinata HOM05D011464 ORTHO05D014025 2.3e-08 62.8 104 32.7
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 2.3e-08 62.8 99 34.3
A08p32250 Brassica napus HOM05D015260 ORTHO05D003858 3.0e-08 62.4 110 31.8
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 3.9e-08 62.0 81 39.5
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 5.1e-08 61.6 67 44.8
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 5.1e-08 61.6 67 41.8
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 6.6e-08 61.2 67 43.3
BcaB03g13129 Brassica carinata HOM05D015260 ORTHO05D003858 6.6e-08 61.2 124 30.6
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 6.6e-08 61.2 67 44.8
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 8.7e-08 60.8 81 42.0
BcaC07g39829 Brassica carinata HOM05D011464 ORTHO05D014025 1.1e-07 60.5 134 32.8
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.5e-07 60.1 80 37.5
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.9e-07 59.7 67 41.8
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 1.9e-07 59.7 96 34.4
BolC8t50653H Brassica oleracea HOM05D011464 ORTHO05D014025 1.9e-07 59.7 134 32.8
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 1.9e-07 59.7 96 34.4
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 1.9e-07 59.7 62 45.2
BolC8t49252H Brassica oleracea HOM05D015260 ORTHO05D003858 2.5e-07 59.3 110 30.9
BolC8t50643H Brassica oleracea HOM05D011464 ORTHO05D014025 2.5e-07 59.3 134 32.8
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 2.5e-07 59.3 84 36.9
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 2.5e-07 59.3 81 38.3
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 3.3e-07 58.9 67 41.8
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 3.3e-07 58.9 87 39.1
CARHR011770 Cardamine hirsuta HOM05D014411 ORTHO05D015382 3.3e-07 58.9 91 38.5
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 4.3e-07 58.5 67 43.3
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 4.3e-07 58.5 82 39.0
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 4.3e-07 58.5 67 40.3
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 4.3e-07 58.5 67 40.3
BolC8t50649H Brassica oleracea HOM05D011464 ORTHO05D014025 5.6e-07 58.2 134 32.8
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 5.6e-07 58.2 82 35.4
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 5.6e-07 58.2 84 40.5
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 7.3e-07 57.8 104 35.6
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 7.3e-07 57.8 67 41.8
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 7.3e-07 57.8 67 41.8
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 7.3e-07 57.8 67 40.3
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 7.3e-07 57.8 67 41.8
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 7.3e-07 57.8 80 41.2
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 7.3e-07 57.8 67 40.3
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 7.3e-07 57.8 67 41.8
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 7.3e-07 57.8 97 35.1
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 7.3e-07 57.8 62 40.3
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 7.3e-07 57.8 67 38.8
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 7.3e-07 57.8 67 40.3
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 7.3e-07 57.8 67 43.3
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.3e-06 57.0 67 41.8
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 1.3e-06 57.0 86 34.9
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 1.6e-06 56.6 58 41.4
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 1.6e-06 56.6 67 41.8
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.6e-06 56.6 83 36.1
BraA09t41571Z Brassica rapa HOM05D011464 ORTHO05D014025 2.1e-06 56.2 113 28.3
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 2.1e-06 56.2 67 38.8
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 2.1e-06 56.2 58 44.8
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.1e-06 56.2 62 40.3
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 2.1e-06 56.2 62 40.3
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 2.8e-06 55.8 83 34.9
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 2.8e-06 55.8 58 41.4
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 2.8e-06 55.8 62 41.9
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 2.8e-06 55.8 67 41.8
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 2.8e-06 55.8 67 40.3
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 3.6e-06 55.5 58 43.1
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 3.6e-06 55.5 62 40.3
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 3.6e-06 55.5 63 38.1
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 3.6e-06 55.5 67 38.8
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 3.6e-06 55.5 57 47.4
CARHR018730 Cardamine hirsuta HOM05D013370 ORTHO05D015382 4.8e-06 55.1 115 34.8
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 4.8e-06 55.1 62 41.9
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 4.8e-06 55.1 62 41.9
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 4.8e-06 55.1 67 40.3
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 4.8e-06 55.1 67 38.8
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 6.2e-06 54.7 58 41.4
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 6.2e-06 54.7 73 37.0
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 6.2e-06 54.7 67 41.8
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 6.2e-06 54.7 58 41.4
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 6.2e-06 54.7 68 39.7
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 6.2e-06 54.7 82 39.0
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 8.1e-06 54.3 58 41.4
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 8.1e-06 54.3 62 41.9
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 8.1e-06 54.3 58 43.1
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 8.1e-06 54.3 67 38.8
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 8.1e-06 54.3 67 38.8
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 8.1e-06 54.3 67 40.3


User provided reference genes

Program Settings