Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 4.0e-307 1057.4 569 100.0
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 6.6e-286 986.9 570 90.0
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 6.2e-284 980.3 569 89.3
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 2.2e-281 971.8 571 88.4
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 8.4e-281 969.9 570 87.7
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 3.2e-280 968.0 571 87.6
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-279 966.1 571 87.4
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.2e-279 966.1 571 87.4
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 4.3e-277 957.6 570 90.5
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.2e-276 956.1 571 87.2
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-276 956.1 569 87.3
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.9e-273 944.9 569 87.0
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.6e-268 929.1 569 84.5
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.6e-263 912.5 569 84.7
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.5e-261 906.0 569 84.4
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 4.0e-259 897.9 569 84.2
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 9.0e-259 896.7 569 83.5
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.4e-256 889.4 569 84.4
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 6.7e-254 880.6 581 79.3
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.9e-253 879.0 569 83.7
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 5.6e-253 877.5 569 83.1
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 2.1e-252 875.5 569 83.0
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-250 869.8 535 85.4
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.7e-247 858.6 573 78.5
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 5.3e-243 844.3 569 81.0
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.2e-218 763.5 565 72.2
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 5.0e-217 758.1 566 70.0
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 9.4e-216 753.8 565 69.6
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.3e-214 749.2 565 69.2
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 6.7e-214 747.7 569 68.7
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.3e-213 745.3 569 69.1
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 9.7e-213 743.8 566 68.9
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 3.7e-212 741.9 565 68.8
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 8.2e-212 740.7 565 69.0
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 7.0e-211 737.6 567 68.4
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 3.5e-210 735.3 563 68.0
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.3e-209 733.4 567 66.8
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.2e-209 732.6 574 66.6
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.2e-206 721.5 568 67.4
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.2e-205 720.3 402 90.8
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 3.4e-205 718.8 565 66.2
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.7e-204 716.5 567 66.1
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.0e-201 707.2 566 67.7
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.3e-201 706.1 567 64.6
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 3.8e-201 705.3 569 64.7
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 2.5e-200 702.6 567 66.3
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.2e-199 700.3 576 64.2
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.1e-199 699.5 570 64.6
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 2.8e-199 699.1 569 68.5
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 6.1e-199 698.0 384 91.4
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.0e-198 697.2 566 64.7
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 2.3e-198 696.0 565 67.3
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.5e-197 693.3 571 63.7
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.4e-197 691.8 566 64.1
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 7.5e-197 691.0 572 63.1
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 9.8e-197 690.6 576 63.7
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.7e-196 689.9 575 64.5
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 6.3e-196 688.0 570 65.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-195 686.0 571 63.4
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-195 686.0 571 63.2
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 7.0e-195 684.5 564 66.8
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 9.2e-195 684.1 570 62.1
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 7.8e-194 681.0 566 62.7
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 7.8e-194 681.0 572 63.3
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 7.8e-194 681.0 580 61.7
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.7e-193 679.9 580 62.9
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.3e-193 679.5 472 82.4
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-193 679.1 565 65.1
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-193 679.1 565 65.1
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 5.0e-193 678.3 567 62.1
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 5.0e-193 678.3 572 64.2
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 8.6e-193 677.6 566 62.5
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.5e-192 676.8 568 64.8
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.5e-192 676.8 573 64.9
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.9e-192 676.4 565 63.4
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 9.5e-192 674.1 561 61.9
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 9.5e-192 674.1 537 64.8
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.8e-190 669.8 573 63.4
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.5e-189 666.8 573 63.7
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 5.7e-189 664.8 567 62.3
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.5e-189 664.5 508 67.9
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 2.2e-188 662.9 561 61.3
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 8.3e-188 661.0 568 63.9
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.8e-187 659.8 575 62.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.6e-186 656.8 595 59.5
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 5.0e-185 651.7 567 62.6
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 7.3e-184 647.9 576 61.6
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 6.2e-183 644.8 433 74.6
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 6.8e-182 641.3 564 60.1
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 8.9e-182 641.0 567 61.4
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.0e-181 639.8 566 60.6
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 4.4e-181 638.6 566 62.7
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.2e-178 630.6 566 60.8
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 7.8e-178 627.9 565 60.4
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 3.0e-177 625.9 572 58.6
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 5.0e-177 625.2 576 58.5
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 1.5e-176 623.6 570 60.2
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.5e-176 623.6 573 59.2
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 2.8e-175 619.4 578 61.9
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.2e-173 614.0 571 59.0
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 9.9e-173 610.9 445 68.5
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 9.9e-173 610.9 571 58.5
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 9.9e-173 610.9 575 60.9
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.7e-172 610.1 566 58.0
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.1e-170 603.2 572 55.4
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.0e-169 600.9 564 59.2
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-169 600.5 564 61.0
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.5e-168 597.0 436 70.2
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.5e-168 596.3 580 56.6
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 5.6e-168 595.1 441 67.1
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.6e-167 593.6 565 58.4
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.8e-167 592.8 402 72.9
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 4.6e-162 575.5 576 57.6
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-160 570.5 573 55.3
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.4e-155 553.9 583 54.4
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-155 553.1 565 55.9
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 5.1e-153 545.4 569 54.3
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 6.6e-153 545.0 339 77.6
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 7.3e-152 541.6 569 54.7
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 3.7e-143 512.7 565 54.3
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 7.6e-141 505.0 567 50.1
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 9.9e-141 504.6 556 53.2
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.2e-139 499.2 558 52.2
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 7.9e-138 495.0 521 51.6
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.4e-131 474.2 302 75.2
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 4.2e-123 446.0 444 48.4
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 7.0e-102 375.6 396 54.0
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.2e-99 366.7 378 47.4
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 2.0e-96 357.5 327 64.8
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.1e-91 341.7 512 45.7
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.6e-85 321.2 391 49.1
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 2.3e-84 317.4 199 74.9
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.8e-81 307.8 295 59.7
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.1e-74 282.7 359 46.8
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 8.0e-74 282.3 211 63.0
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.6e-61 240.0 156 72.4
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 2.2e-55 221.1 191 57.6
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 8.1e-50 202.6 281 48.8
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 8.4e-47 192.6 220 55.9
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.6e-40 171.0 191 55.0
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.7e-36 158.3 287 38.0
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 3.8e-31 140.6 502 27.5
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-28 132.5 92 66.3
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.8e-28 131.7 93 65.6
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 8.7e-20 102.8 152 46.7
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.6e-19 100.1 181 30.4
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 5.6e-19 100.1 79 60.8
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 2.8e-18 97.8 116 45.7
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-16 92.4 51 84.3
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-16 92.0 71 60.6
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 2.0e-16 91.7 70 61.4
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.9e-15 87.8 71 57.7
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 2.1e-13 81.6 74 55.4
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.0e-12 79.3 140 39.3
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.8e-12 78.6 78 55.1
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.0e-07 62.8 64 48.4


User provided reference genes

Program Settings