Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 3.9e-54 214.5 107 100.0
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.8e-52 208.4 107 95.3
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 7.5e-50 200.3 107 91.6
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 1.3e-49 199.5 107 91.6
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 3.7e-49 198.0 107 90.7
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 3.7e-49 198.0 107 90.7
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 1.4e-48 196.1 107 89.7
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 2.1e-47 192.2 107 87.9
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 2.1e-47 192.2 107 87.9
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.7e-46 189.1 107 83.2
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 9.5e-45 183.3 107 82.2
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.1e-44 182.2 107 78.5
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 3.6e-44 181.4 108 81.5
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.4e-43 179.5 108 83.3
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.4e-43 178.7 107 82.2
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 2.4e-43 178.7 98 90.8
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 3.1e-43 178.3 108 81.5
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.2e-42 176.4 108 80.6
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 2.6e-42 175.3 95 90.5
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 3.4e-42 174.9 109 78.9
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 4.9e-41 171.0 107 72.0
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 4.9e-41 171.0 107 72.9
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 2.4e-40 168.7 107 73.8
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 2.4e-40 168.7 107 73.8
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 9.2e-40 166.8 107 72.9
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 1.6e-39 166.0 107 72.0
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 5.1e-38 161.0 108 70.4
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 5.1e-38 161.0 108 69.4
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.5e-37 159.5 88 87.5
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.9e-37 159.1 107 69.2
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 3.3e-37 158.3 107 69.2
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 3.3e-37 158.3 108 69.4
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 4.3e-37 157.9 107 67.3
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 4.3e-37 157.9 107 65.4
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 5.6e-37 157.5 107 67.3
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 7.3e-37 157.1 108 67.6
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 2.1e-36 155.6 85 90.6
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 2.1e-36 155.6 85 90.6
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.1e-36 155.6 107 66.4
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.1e-36 155.6 108 67.6
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 3.6e-36 154.8 107 65.4
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 3.6e-36 154.8 107 67.3
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 8.1e-36 153.7 108 63.9
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.8e-35 152.5 107 67.3
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 64.8
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 66.7
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 5.2e-35 151.0 108 64.8
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 6.9e-35 150.6 107 64.5
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 9.0e-35 150.2 108 65.7
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.0e-34 149.1 108 63.9
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.0e-34 149.1 108 63.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 2.0e-34 149.1 108 64.8
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.6e-34 148.7 107 66.4
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 2.6e-34 148.7 104 66.3
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 2.6e-34 148.7 108 63.0
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.4e-34 148.3 107 63.6
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 3.4e-34 148.3 107 62.6
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 5.8e-34 147.5 107 63.6
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.3e-33 146.4 108 66.7
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 63.0
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.7e-33 146.0 107 61.7
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 64.8
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.2e-33 145.6 107 64.5
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 63.0
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.9e-33 144.4 107 64.5
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 4.9e-33 144.4 109 61.5
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 6.4e-33 144.1 108 63.0
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 8.4e-33 143.7 107 59.8
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 8.4e-33 143.7 108 63.9
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 8.4e-33 143.7 108 63.0
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.1e-32 143.3 107 58.9
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 63.9
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 63.9
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 3.2e-32 141.7 91 73.6
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 4.2e-32 141.4 107 59.8
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 4.2e-32 141.4 107 61.7
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 5.4e-32 141.0 107 61.7
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 5.4e-32 141.0 107 57.9
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 5.4e-32 141.0 106 61.3
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 7.1e-32 140.6 108 58.3
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 7.1e-32 140.6 107 58.9
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.2e-31 139.8 107 58.9
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.2e-31 139.8 106 59.4
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.6e-31 139.4 107 57.9
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 2.1e-31 139.0 108 60.2
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 2.1e-31 139.0 107 60.7
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 2.7e-31 138.7 107 57.9
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 3.5e-31 138.3 107 61.7
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 6.0e-31 137.5 107 59.8
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 6.0e-31 137.5 107 60.7
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 6.0e-31 137.5 107 57.0
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.0e-30 136.7 107 58.9
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.7e-30 136.0 107 57.0
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 57.4
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 5.1e-30 134.4 107 59.8
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 5.1e-30 134.4 108 63.0
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 5.1e-30 134.4 107 54.2
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 8.7e-30 133.7 107 58.9
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 8.7e-30 133.7 108 61.1
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 8.7e-30 133.7 107 57.9
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 1.1e-29 133.3 93 67.7
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.5e-29 132.9 107 57.0
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.9e-29 132.5 107 58.9
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 59.3
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 5.6e-29 131.0 107 57.9
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.3e-28 129.8 107 57.0
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 1.3e-28 129.8 108 59.3
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 2.1e-28 129.0 107 56.1
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 3.6e-28 128.3 108 58.3
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 4.8e-28 127.9 108 57.4
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 6.2e-28 127.5 107 53.3
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 6.2e-28 127.5 107 54.2
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 8.1e-28 127.1 108 57.4
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 8.1e-28 127.1 90 66.7
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.8e-27 125.9 84 70.2
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 1.8e-27 125.9 111 56.8
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 3.1e-27 125.2 88 68.2
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 5.3e-27 124.4 107 52.3
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 5.3e-27 124.4 84 69.0
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.3e-27 124.4 87 67.8
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 57.4
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 9.0e-27 123.6 107 52.3
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 9.0e-27 123.6 99 62.6
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.5e-26 122.9 86 66.3
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.5e-26 122.9 103 51.5
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 2.6e-26 122.1 85 68.2
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 4.5e-26 121.3 88 63.6
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 5.8e-26 120.9 107 53.3
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 1.7e-25 119.4 108 50.9
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 4.9e-25 117.9 85 65.9
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 4.9e-25 117.9 107 51.4
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.1e-24 116.7 107 57.0
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 1.1e-24 116.7 86 64.0
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 4.2e-24 114.8 107 47.7
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 7.1e-24 114.0 85 64.7
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 3.5e-23 111.7 87 60.9
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.0e-22 110.2 87 60.9
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 1.8e-22 109.4 87 58.6
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 2.3e-22 109.0 71 63.4
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 3.3e-21 105.1 85 56.5
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.6e-20 102.8 100 46.0
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 8.1e-20 100.5 88 54.5
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.4e-19 99.8 100 45.0
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 3.1e-19 98.6 65 72.3
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 5.3e-19 97.8 106 44.3
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 9.9e-18 93.6 108 42.6
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 2.2e-17 92.4 85 54.1
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 1.1e-16 90.1 81 56.8
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 4.2e-16 88.2 87 48.3
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 1.2e-15 86.7 111 48.6
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.2e-15 86.7 87 51.7
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.2e-15 86.7 85 48.2
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 6.7e-14 80.9 65 61.5
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 5.6e-13 77.8 58 62.1
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 6.2e-12 74.3 109 40.4
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 2.4e-11 72.4 110 39.1
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 6.9e-11 70.9 62 46.8
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 1.3e-06 56.6 42 61.9
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 1.3e-06 56.6 64 43.8
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 1.3e-06 56.6 64 43.8


User provided reference genes

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