Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 8.7e-99 363.6 180 100.0
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 2.8e-97 358.6 180 97.2
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 5.3e-96 354.4 180 96.1
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.0e-95 352.4 180 95.0
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.0e-95 352.4 180 95.0
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 2.6e-95 352.1 180 94.4
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 3.4e-95 351.7 180 95.0
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 5.8e-95 350.9 180 94.4
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 9.9e-95 350.1 180 94.4
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 9.9e-95 350.1 180 94.4
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 2.9e-94 348.6 180 94.4
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.9e-90 335.9 180 89.4
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 6.2e-89 330.9 181 90.1
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 1.4e-88 329.7 203 81.3
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.8e-88 329.3 180 86.1
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 85.6
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 85.6
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 85.0
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 85.0
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 85.0
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.9
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 85.0
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 1.1e-85 320.1 179 83.8
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 82.8
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 83.3
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 83.3
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 3.2e-85 318.5 180 82.2
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 85.0
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 83.9
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 83.3
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 5.5e-85 317.8 180 82.2
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 5.5e-85 317.8 180 82.8
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 82.8
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.7
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.7
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 82.8
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 81.1
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 82.2
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 81.7
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 6.0e-84 314.3 180 81.1
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 6.0e-84 314.3 180 81.1
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 7.9e-84 313.9 180 82.8
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 7.9e-84 313.9 180 82.8
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 82.8
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 80.6
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 1.3e-83 313.2 180 82.2
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 1.3e-83 313.2 180 82.8
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.3e-83 313.2 180 82.8
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.3e-83 313.2 180 82.8
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 1.8e-83 312.8 180 80.6
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 2.3e-83 312.4 180 80.6
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.3e-83 312.4 180 81.1
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 3.0e-83 312.0 180 81.1
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 3.9e-83 311.6 180 81.1
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 5.1e-83 311.2 180 79.4
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 6.7e-83 310.8 180 80.6
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 1.1e-82 310.1 180 80.0
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 1.5e-82 309.7 181 81.2
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 4.3e-82 308.1 180 79.4
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 7.4e-82 307.4 180 78.9
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 7.4e-82 307.4 180 78.9
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 9.6e-82 307.0 180 80.0
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.6e-81 306.2 180 78.3
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 2.8e-81 305.4 181 79.6
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 1.4e-80 303.1 180 78.3
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 3.1e-80 302.0 180 78.9
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 4.0e-80 301.6 180 77.2
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 9.0e-80 300.4 180 78.3
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 2.0e-79 299.3 180 78.3
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.6e-79 298.9 167 88.0
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 1.0e-78 297.0 199 72.4
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 1.3e-78 296.6 206 71.4
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.5e-77 292.4 165 81.2
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 2.5e-77 292.4 180 75.6
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 7.1e-77 290.8 187 73.3
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 6.0e-76 287.7 180 75.6
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 1.3e-75 286.6 160 85.0
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 6.7e-75 284.3 159 82.4
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.5e-74 282.3 175 76.6
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 9.6e-74 280.4 172 77.3
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 4.8e-73 278.1 159 82.4
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 6.3e-73 277.7 160 81.2
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 6.3e-73 277.7 177 72.3
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 8.2e-73 277.3 161 79.5
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.4e-72 276.6 160 80.6
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 6.9e-72 274.2 172 79.1
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 1.2e-71 273.5 180 71.7
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 5.9e-71 271.2 174 69.5
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 2.9e-70 268.9 156 78.8
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 4.2e-69 265.0 164 76.2
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 7.2e-69 264.2 162 75.3
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.1e-68 262.7 180 69.4
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 8.7e-67 257.3 175 66.3
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 7.4e-66 254.2 218 62.8
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 6.3e-65 251.1 175 65.1
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 6.9e-64 247.7 153 75.2
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 5.9e-63 244.6 139 80.6
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 5.9e-63 244.6 139 79.1
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 1.2e-60 236.9 171 64.3
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.8e-57 225.7 181 64.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 4.2e-53 211.8 114 82.5
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 1.5e-50 203.4 121 76.9
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 1.1e-48 197.2 117 72.6
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 4.1e-48 195.3 174 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 1.3e-46 190.3 130 68.5
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.3e-43 179.5 188 52.7
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.3e-43 179.5 188 52.7
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 2.2e-38 162.9 96 77.1
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 3.2e-37 159.1 93 74.2
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 4.2e-37 158.7 113 70.8
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 9.4e-37 157.5 172 43.6
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 9.4e-37 157.5 91 81.3
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 1.2e-36 157.1 174 44.3
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 8.8e-35 151.0 126 56.3
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 2.1e-28 129.8 177 41.2
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 6.1e-28 128.3 90 67.8
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.4e-27 127.1 99 69.7
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 3.7e-25 119.0 71 74.6
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 4.1e-24 115.5 100 67.0
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.0e-22 110.9 65 78.5
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 8.6e-22 107.8 56 100.0
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 1.3e-17 94.0 56 82.1
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 2.4e-16 89.7 50 80.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.0e-14 82.8 46 80.4
Cfa024503 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.2e-07 60.8 166 24.7
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.7e-06 57.0 33 75.8
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.3e-06 56.6 45 60.0


User provided reference genes

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