Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G34790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 6.0e-102 374.4 219 100.0
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 5.4e-95 351.3 219 83.6
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 1.1e-87 327.0 219 79.0
Thhalv10026210m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 1.1e-84 317.0 220 74.5
CARHR226160 Cardamine hirsuta HOM05D005907 ORTHO05D007033 4.0e-82 308.5 220 83.6
BcaC09g51418 Brassica carinata HOM05D005907 ORTHO05D007033 3.8e-80 302.0 219 71.2
C01p13330 Brassica napus HOM05D005907 ORTHO05D007033 3.8e-80 302.0 219 71.2
BolC1t01308H Brassica oleracea HOM05D005907 ORTHO05D007033 3.8e-80 302.0 219 71.2
A01p11320 Brassica napus HOM05D005907 ORTHO05D007033 7.1e-79 297.7 219 70.3
BraA01t01076Z Brassica rapa HOM05D005907 ORTHO05D007033 7.1e-79 297.7 219 70.3
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 3.3e-76 288.9 165 84.8
BcaNung01784 Brassica carinata HOM05D005907 ORTHO05D007033 5.6e-76 288.1 219 75.8
Sp4g03880 Schrenkiella parvula HOM05D005907 ORTHO05D007033 7.4e-76 287.7 164 85.4
Aa31LG6G1970 Aethionema arabicum HOM05D005907 ORTHO05D007033 1.1e-66 257.3 225 62.7
THA.LOC104806200 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 4.3e-60 235.3 218 58.3
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 4.1e-34 149.1 162 45.1
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 4.5e-33 145.6 159 46.5
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 5.9e-33 145.2 149 49.0
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 7.7e-33 144.8 155 47.1
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 6.5e-32 141.7 156 46.8
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 6.5e-32 141.7 160 46.9
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 8.5e-32 141.4 161 43.5
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 1.1e-31 141.0 159 44.0
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 1.9e-31 140.2 147 46.9
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 2.5e-31 139.8 147 46.3
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 2.5e-31 139.8 164 45.1
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 3.2e-31 139.4 157 45.2
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 4.2e-31 139.0 151 47.0
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 5.5e-31 138.7 150 46.0
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 7.2e-31 138.3 146 48.6
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 7.2e-31 138.3 145 45.5
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 7.2e-31 138.3 164 45.7
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 9.4e-31 137.9 155 45.2
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 1.2e-30 137.5 147 45.6
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.2e-30 137.5 147 45.6
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 1.6e-30 137.1 158 45.6
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 1.6e-30 137.1 150 47.3
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 2.1e-30 136.7 149 47.0
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 2.1e-30 136.7 159 44.0
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 2.1e-30 136.7 147 49.0
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 2.7e-30 136.3 151 47.0
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 2.7e-30 136.3 151 47.0
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 2.7e-30 136.3 151 45.0
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 3.6e-30 136.0 155 44.5
Medtr8g072220 Medicago truncatula HOM05D005907 ORTHO05D007033 3.6e-30 136.0 154 46.1
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 8.0e-30 134.8 152 45.4
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 1.0e-29 134.4 157 44.6
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 1.4e-29 134.0 151 43.0
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 1.8e-29 133.7 147 45.6
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 1.8e-29 133.7 159 44.0
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 2.3e-29 133.3 160 41.2
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 3.0e-29 132.9 144 46.5
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 4.0e-29 132.5 162 44.4
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 4.0e-29 132.5 158 43.7
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 5.2e-29 132.1 163 43.6
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 6.7e-29 131.7 147 46.3
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 8.8e-29 131.3 164 46.3
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 1.2e-28 131.0 165 43.6
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 1.2e-28 131.0 162 42.0
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 1.5e-28 130.6 157 43.3
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 1.5e-28 130.6 155 45.2
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 2.0e-28 130.2 150 43.3
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 2.0e-28 130.2 161 42.2
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 2.6e-28 129.8 161 39.8
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 2.6e-28 129.8 165 44.2
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 3.3e-28 129.4 155 44.5
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 4.4e-28 129.0 161 41.0
BcaC07g37737 Brassica carinata HOM05D005907 ORTHO05D007033 1.3e-27 127.5 145 42.8
BolC8t48118H Brassica oleracea HOM05D005907 ORTHO05D007033 1.3e-27 127.5 145 42.8
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 1.3e-27 127.5 152 44.7
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 1.7e-27 127.1 158 40.5
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 2.2e-27 126.7 157 43.9
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 3.7e-27 125.9 145 44.8
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 4.8e-27 125.6 160 40.0
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 4.8e-27 125.6 159 40.3
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 4.8e-27 125.6 157 40.1
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 4.8e-27 125.6 142 45.1
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 6.3e-27 125.2 155 43.9
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 1.1e-26 124.4 155 41.3
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 1.4e-26 124.0 153 46.4
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 1.4e-26 124.0 160 42.5
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 1.4e-26 124.0 155 41.9
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 1.8e-26 123.6 173 39.9
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 1.8e-26 123.6 159 38.4
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 2.4e-26 123.2 164 45.7
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 2.4e-26 123.2 144 40.3
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 4.1e-26 122.5 154 41.6
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 9.1e-26 121.3 164 40.2
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 1.2e-25 120.9 160 45.0
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 2.7e-25 119.8 168 44.0
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 2.7e-25 119.8 157 40.8
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 2.7e-25 119.8 147 42.9
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 4.5e-25 119.0 159 40.9
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 4.5e-25 119.0 161 37.9
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 5.9e-25 118.6 161 39.1
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 7.7e-25 118.2 154 42.2
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 1.3e-24 117.5 123 47.2
SGA_v2.0_scaffold121G33056 Striga asiatica HOM05D005907 ORTHO05D007033 1.3e-24 117.5 152 40.8
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 1.3e-24 117.5 145 42.1
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 2.2e-24 116.7 159 40.3
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 2.2e-24 116.7 154 42.2
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 3.8e-24 115.9 151 43.7
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 1.5e-23 114.0 135 45.2
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 9.4e-23 111.3 166 38.0
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 1.2e-22 110.9 152 38.8
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.6e-22 110.5 161 40.4
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 2.7e-22 109.8 129 45.0
unitig_37.g12906 Utricularia gibba HOM05D005907 ORTHO05D007033 3.0e-21 106.3 154 39.0
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 2.6e-20 103.2 166 37.3
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 1.1e-18 97.8 160 38.8
Haze_08421 Corylus avellana HOM05D005907 ORTHO05D007033 1.7e-16 90.5 94 47.9
Dinv37434 Davidia involucrata HOM05D005907 ORTHO05D007033 2.2e-16 90.1 112 38.4
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 6.5e-16 88.6 117 41.9
Os02g0703300 Oryza sativa ssp. japonica HOM05D005907 ORTHO05D007033 1.5e-15 87.4 135 32.6
EL10Ac5g12591 Beta vulgaris HOM05D005907 ORTHO05D007033 1.2e-14 84.3 166 33.7
Psat4g109120 Pisum sativum HOM05D005907 ORTHO05D007033 1.6e-14 84.0 120 37.5
SEGI_02785 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 4.7e-14 82.4 136 37.5
Zm00001eb251950 Zea mays HOM05D005907 ORTHO05D007033 6.8e-13 78.6 137 35.8
SEGI_15207 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 8.8e-13 78.2 138 31.9
Peaxi162Scf00550g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 1.2e-12 77.8 101 39.6
Sed0021253 Sechium edule HOM05D005907 ORTHO05D007033 2.0e-12 77.0 115 35.7
ClCG11G016120 Citrullus lanatus HOM05D005907 ORTHO05D007033 4.9e-11 72.4 95 40.0
Actinidia18697 Actinidia chinensis HOM05D002819 ORTHO05D003207 2.4e-10 70.1 152 33.6
Potri.019G048300 Populus trichocarpa HOM05D002819 ORTHO05D003207 1.2e-09 67.8 156 34.0
Sabra13G0071600 Salix brachista HOM05D002819 ORTHO05D003207 1.2e-09 67.8 147 34.7
SGA_v2.0_scaffold50G18432 Striga asiatica HOM05D002819 ORTHO05D003207 1.2e-09 67.8 141 32.6
arahy.Tifrunner.gnm1.ann1.UI3LS8 Arachis hypogaea HOM05D005907 ORTHO05D007033 1.6e-09 67.4 95 41.1
CiPaw.06G020000 Carya illinoinensis HOM05D002819 ORTHO05D003207 5.9e-09 65.5 139 33.1
Duzib128G0634 Durio zibethinus HOM05D002819 ORTHO05D003207 1.0e-08 64.7 147 34.0
Aqoxy2G03476 Aquilegia oxysepala HOM05D005907 ORTHO05D007033 1.3e-08 64.3 93 36.6
Aqoxy3G02055 Aquilegia oxysepala HOM05D002819 ORTHO05D003207 1.3e-08 64.3 148 29.7
arahy.Tifrunner.gnm1.ann1.VB8HUC Arachis hypogaea HOM05D005907 ORTHO05D007033 1.3e-08 64.3 66 45.5
Gohir.A02G139200 Gossypium hirsutum HOM05D002819 ORTHO05D003207 1.3e-08 64.3 149 34.2
Gohir.D03G049900 Gossypium hirsutum HOM05D002819 ORTHO05D003207 1.3e-08 64.3 149 34.2
Gorai.003G051400 Gossypium raimondii HOM05D002819 ORTHO05D003207 1.3e-08 64.3 149 34.2
Actinidia28266 Actinidia chinensis HOM05D002819 ORTHO05D003207 1.7e-08 63.9 141 31.9
Migut.F00954 Erythranthe guttata HOM05D002819 ORTHO05D003207 2.9e-08 63.2 142 32.4
Atru.chr12.2014 Acer truncatum HOM05D002819 ORTHO05D003207 3.8e-08 62.8 156 32.7
Actinidia08734 Actinidia chinensis HOM05D002819 ORTHO05D003207 3.8e-08 62.8 146 32.2
arahy.Tifrunner.gnm1.ann1.VUM9KL Arachis hypogaea HOM05D002819 ORTHO05D003207 3.8e-08 62.8 149 29.5
arahy.Tifrunner.gnm1.ann1.QIP5TL Arachis hypogaea HOM05D002819 ORTHO05D003207 5.0e-08 62.4 149 29.5
MELO3C005433.2 Cucumis melo HOM05D002819 ORTHO05D003207 6.6e-08 62.0 150 30.0
PGR042G3857 Punica granatum HOM05D002819 ORTHO05D003207 6.6e-08 62.0 144 31.9
MELO3C016217.2 Cucumis melo HOM05D005907 ORTHO05D007033 8.6e-08 61.6 57 49.1
EL10Ac3g05101 Beta vulgaris HOM05D002819 ORTHO05D003207 1.1e-07 61.2 162 34.0
ClCG01G005010 Citrullus lanatus HOM05D002819 ORTHO05D003207 1.1e-07 61.2 148 29.1
CsaV3_5G005270 Cucumis sativus L. HOM05D002819 ORTHO05D003207 1.1e-07 61.2 148 29.1
Lalb_Chr19g0139871 Lupinus albus HOM05D002819 ORTHO05D003207 1.1e-07 61.2 146 29.5
unitig_578.g16665 Utricularia gibba HOM05D002819 ORTHO05D003207 1.1e-07 61.2 141 29.8
SEGI_27585 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 1.5e-07 60.8 145 28.3
Hma1.2p1_0758F.1_g213570 Hydrangea macrophylla HOM05D002819 ORTHO05D003207 1.9e-07 60.5 144 33.3
AUR62028148 Chenopodium quinoa HOM05D002819 ORTHO05D003207 3.3e-07 59.7 166 30.7
DCAR_010549 Daucus carota HOM05D002819 ORTHO05D003207 3.3e-07 59.7 157 29.9
Eucgr.K00096 Eucalyptus grandis HOM05D002819 ORTHO05D003207 3.3e-07 59.7 158 31.0
arahy.Tifrunner.gnm1.ann1.93DHY7 Arachis hypogaea HOM05D005907 ORTHO05D007033 7.3e-07 58.5 56 46.4
CsaV3_4G004490 Cucumis sativus L. HOM05D002819 ORTHO05D003207 7.3e-07 58.5 159 28.3
HanXRQChr15g0491051 Helianthus annuus HOM05D002819 ORTHO05D003207 7.3e-07 58.5 146 30.8
Haze_08422 Corylus avellana HOM05D005907 ORTHO05D007033 1.2e-06 57.8 60 43.3
Nitab4.5_0009213g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 1.2e-06 57.8 64 37.5
CARHR196000 Cardamine hirsuta HOM05D002819 ORTHO05D003207 1.6e-06 57.4 148 28.4
Glyma.11G092900 Glycine max HOM05D002819 ORTHO05D003207 1.6e-06 57.4 152 32.9
Eucgr.G01794 Eucalyptus grandis HOM05D002819 ORTHO05D003207 4.7e-06 55.8 150 30.0
AL6G28260 Arabidopsis lyrata HOM05D002819 ORTHO05D003207 6.1e-06 55.5 147 26.5


User provided reference genes

Program Settings