Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 3.3e-130 468.4 237 100.0
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 4.6e-108 394.8 236 87.3
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 2.6e-103 379.0 247 82.6
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 1.6e-97 359.8 238 81.9
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 6.3e-97 357.8 249 78.3
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 1.8e-96 356.3 238 81.1
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 1.8e-96 356.3 238 77.3
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 1.8e-96 356.3 238 77.3
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 5.3e-96 354.8 240 80.8
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 6.7e-91 337.8 238 79.0
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 2.9e-78 295.8 174 89.1
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 1.1e-77 293.9 259 64.9
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 4.7e-68 261.9 246 61.0
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 6.8e-59 231.5 187 69.5
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 4.8e-57 225.3 237 51.1
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 6.3e-57 224.9 238 51.7
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 3.1e-56 222.6 238 50.8
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 4.1e-56 222.2 244 50.0
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.0e-55 219.9 238 50.4
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 1.0e-54 217.6 238 51.7
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 1.1e-53 214.2 238 52.1
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 1.5e-53 213.8 232 50.9
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 3.6e-52 209.1 239 50.2
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 1.4e-51 207.2 223 53.4
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 1.8e-51 206.8 244 48.4
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 2.3e-51 206.5 242 50.0
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 4.0e-51 205.7 233 48.1
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 6.8e-51 204.9 236 48.3
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 8.9e-51 204.5 242 48.8
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 2.6e-50 203.0 240 48.8
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 4.4e-50 202.2 244 48.4
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 9.8e-50 201.1 233 49.4
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 2.8e-49 199.5 246 45.9
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 6.3e-49 198.4 232 49.1
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 2.4e-48 196.4 226 50.0
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 2.4e-48 196.4 226 49.1
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 5.4e-48 195.3 249 47.0
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 7.0e-48 194.9 226 50.4
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 1.2e-47 194.1 242 44.2
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 2.7e-47 193.0 230 47.8
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 1.7e-46 190.3 237 48.9
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 8.6e-46 188.0 198 53.0
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 1.1e-45 187.6 232 46.6
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 1.5e-45 187.2 228 49.1
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 1.5e-45 187.2 202 51.0
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 1.5e-45 187.2 205 50.7
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 1.5e-45 187.2 230 47.8
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 4.3e-45 185.7 249 46.2
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 9.5e-45 184.5 198 51.0
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 9.5e-45 184.5 226 50.0
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 1.2e-44 184.1 198 50.0
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 2.1e-44 183.3 198 50.0
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 2.8e-44 183.0 209 50.2
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 3.6e-44 182.6 202 51.0
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 4.7e-44 182.2 205 49.8
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 1.0e-43 181.0 204 50.0
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.0e-43 181.0 198 50.5
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 1.4e-43 180.6 242 47.1
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 3.1e-43 179.5 198 50.0
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 3.1e-43 179.5 214 49.1
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 4.4e-42 175.6 239 47.3
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 2.9e-41 172.9 217 47.5
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 4.1e-40 169.1 200 49.0
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 2.3e-38 163.3 201 45.3
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 6.6e-38 161.8 160 54.4
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 8.6e-38 161.4 205 46.8
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 1.5e-37 160.6 199 46.7
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 1.5e-37 160.6 202 45.0
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 4.0e-35 152.5 227 44.5
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 6.8e-35 151.8 199 44.2
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 8.9e-35 151.4 213 45.1
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 2.0e-34 150.2 174 50.6
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 4.4e-34 149.1 198 48.5
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 3.7e-33 146.0 225 43.6
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 2.4e-32 143.3 198 43.9
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 2.1e-31 140.2 215 44.2
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 1.0e-30 137.9 175 48.0
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 1.3e-30 137.5 191 44.5
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 3.3e-29 132.9 171 50.9
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 4.0e-27 125.9 172 43.0
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 1.0e-22 111.3 192 40.6
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 2.5e-21 106.7 169 43.2
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.4e-19 100.1 80 60.0
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 2.4e-19 100.1 196 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 8.9e-19 98.2 187 36.4
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 2.0e-18 97.1 138 46.4
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 9.9e-18 94.7 200 36.5
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 2.2e-17 93.6 138 45.7
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 4.9e-17 92.4 152 42.1
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 1.1e-16 91.3 62 66.1
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 1.4e-16 90.9 152 41.4
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 3.5e-15 86.3 58 67.2
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 6.0e-15 85.5 158 35.4
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 7.8e-15 85.1 63 63.5
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 8.7e-14 81.6 169 33.7
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 9.6e-13 78.2 58 60.3
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 4.8e-12 75.9 99 48.5
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 3.1e-11 73.2 86 40.7
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 3.1e-11 73.2 58 58.6
Hma1.2p1_0264F.1_g105790 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.5e-10 70.9 119 41.2
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 3.4e-10 69.7 89 39.3
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 2.9e-09 66.6 154 35.7
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 8.4e-09 65.1 50 58.0
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 1.1e-08 64.7 91 41.8
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 3.5e-07 59.7 44 56.8
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 4.6e-07 59.3 81 38.3
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 4.6e-07 59.3 95 33.7
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 7.9e-07 58.5 81 38.3
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 7.9e-07 58.5 89 37.1
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 7.9e-07 58.5 81 35.8
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 1.0e-06 58.2 90 34.4
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 1.0e-06 58.2 86 37.2
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 1.0e-06 58.2 85 36.5
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 1.0e-06 58.2 81 34.6
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 1.0e-06 58.2 81 37.0
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 1.3e-06 57.8 81 37.0
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 1.3e-06 57.8 91 36.3
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 1.3e-06 57.8 91 36.3
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 1.3e-06 57.8 81 34.6
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 1.3e-06 57.8 81 34.6
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 1.7e-06 57.4 80 37.5
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 1.7e-06 57.4 89 36.0
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 1.7e-06 57.4 81 35.8
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 1.7e-06 57.4 89 34.8
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 1.7e-06 57.4 81 34.6
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 1.7e-06 57.4 81 37.0
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 2.3e-06 57.0 83 36.1
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 2.3e-06 57.0 83 36.1
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 2.3e-06 57.0 83 36.1
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 2.3e-06 57.0 83 36.1
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 2.3e-06 57.0 81 34.6
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 2.3e-06 57.0 90 33.3
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 2.3e-06 57.0 83 34.9
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 2.3e-06 57.0 81 34.6
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 2.3e-06 57.0 81 35.8
SMO230G0119 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 2.3e-06 57.0 89 37.1
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 3.0e-06 56.6 87 36.8
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 3.0e-06 56.6 80 36.2
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 3.0e-06 56.6 75 37.3
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 3.0e-06 56.6 81 35.8
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 3.0e-06 56.6 81 35.8
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 3.0e-06 56.6 81 35.8
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 3.0e-06 56.6 81 34.6
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 34.6
CARHR031420 Cardamine hirsuta HOM05D003003 ORTHO05D008343 3.9e-06 56.2 102 33.3
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 3.9e-06 56.2 80 36.2
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 34.6
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 35.8
MCO10G123 Micromonas commoda HOM05D003003 ORTHO05D009387 3.9e-06 56.2 78 37.2
MCO12G079 Micromonas commoda HOM05D003003 ORTHO05D008343 3.9e-06 56.2 75 38.7
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 35.8
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 35.8
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 34.6
GSVIVG01029873001 Vitis vinifera HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 35.8
AL1G46140 Arabidopsis lyrata HOM05D003003 ORTHO05D008343 5.1e-06 55.8 81 35.8
AT1G32070 Arabidopsis thaliana HOM05D003003 ORTHO05D008343 5.1e-06 55.8 81 35.8
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 5.1e-06 55.8 80 36.2
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 5.1e-06 55.8 81 35.8
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 5.1e-06 55.8 81 35.8
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 5.1e-06 55.8 81 35.8
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 5.1e-06 55.8 80 36.2
AUR62029798 Chenopodium quinoa HOM05D003003 ORTHO05D008343 5.1e-06 55.8 80 36.2
Mapoly0166s0017 Marchantia polymorpha HOM05D003003 ORTHO05D008343 5.1e-06 55.8 81 37.0
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 5.1e-06 55.8 81 34.6
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 5.1e-06 55.8 81 35.8
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 5.1e-06 55.8 81 34.6
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 5.1e-06 55.8 81 34.6
ATR1127G143 Amborella trichopoda HOM05D003003 ORTHO05D008343 6.6e-06 55.5 80 36.2
PSO170G6425 Papaver somniferum HOM05D003003 ORTHO05D008343 6.6e-06 55.5 81 35.8
Sp1g27730 Schrenkiella parvula HOM05D003003 ORTHO05D008343 6.6e-06 55.5 81 34.6
SEGI_32854 Sequoiadendron giganteum HOM05D003003 ORTHO05D008343 6.6e-06 55.5 99 34.3
arahy.Tifrunner.gnm1.ann1.NKAS4C Arachis hypogaea HOM05D003003 ORTHO05D008343 8.7e-06 55.1 81 34.6
arahy.Tifrunner.gnm1.ann1.V4D1ZF Arachis hypogaea HOM05D003003 ORTHO05D008343 8.7e-06 55.1 81 34.6
CiPaw.09G223200 Carya illinoinensis HOM05D003003 ORTHO05D008343 8.7e-06 55.1 75 37.3
Ca_07787_v3 Cicer arietinum L. HOM05D003003 ORTHO05D008343 8.7e-06 55.1 81 34.6
Glyma.09G272400 Glycine max HOM05D003003 ORTHO05D008343 8.7e-06 55.1 81 33.3
Glyma.18G216900 Glycine max HOM05D003003 ORTHO05D008343 8.7e-06 55.1 81 33.3
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 8.7e-06 55.1 81 34.6
Pp3c11_26820 Physcomitrium patens HOM05D003003 ORTHO05D008343 8.7e-06 55.1 81 35.8
Prupe.6G297300 Prunus persica HOM05D003003 ORTHO05D008343 8.7e-06 55.1 81 34.6
Thecc.04G148400 Theobroma cacao HOM05D003003 ORTHO05D008343 8.7e-06 55.1 81 34.6
Zm00001eb290780 Zea mays HOM05D003003 ORTHO05D008343 8.7e-06 55.1 81 37.0


User provided reference genes

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