Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 5.6e-95 351.3 225 100.0
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 5.2e-85 318.2 226 92.5
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 6.8e-77 291.2 238 81.1
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 6.8e-77 291.2 238 81.1
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 6.8e-77 291.2 238 81.1
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 3.0e-72 275.8 244 77.9
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 8.6e-72 274.2 228 76.3
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 1.1e-71 273.9 245 77.1
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 2.8e-70 269.2 238 76.9
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 2.6e-68 262.7 243 74.9
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 4.4e-68 261.9 243 76.1
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 1.1e-66 257.3 234 73.1
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 1.4e-66 256.9 241 73.0
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-66 256.1 238 71.0
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 2.4e-66 256.1 246 71.5
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 3.2e-66 255.8 238 74.8
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 3.2e-66 255.8 233 76.4
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 1.6e-65 253.4 175 85.7
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 6.6e-56 221.5 201 66.7
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.4e-50 203.8 148 73.6
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 3.5e-49 199.1 171 70.2
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 1.3e-48 197.2 148 69.6
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 8.7e-48 194.5 148 69.6
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.6e-46 190.3 152 67.1
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 2.0e-44 183.3 141 67.4
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 2.6e-44 183.0 187 58.3
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 4.5e-44 182.2 149 68.5
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 4.5e-44 182.2 133 73.7
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 4.5e-44 182.2 191 56.5
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 5.8e-44 181.8 137 69.3
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 7.6e-44 181.4 148 68.2
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 1.0e-43 181.0 225 53.8
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.0e-43 181.0 226 52.2
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 1.3e-43 180.6 146 67.1
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 1.7e-43 180.3 195 55.4
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 2.2e-43 179.9 184 60.3
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 2.9e-43 179.5 148 64.9
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 8.4e-43 177.9 187 58.3
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 1.9e-42 176.8 140 66.4
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.9e-42 176.8 138 68.1
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 2.5e-42 176.4 146 67.8
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 5.5e-42 175.3 149 65.1
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 7.1e-42 174.9 140 70.7
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 9.3e-42 174.5 176 56.8
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 9.3e-42 174.5 142 66.2
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 9.3e-42 174.5 147 66.0
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 9.3e-42 174.5 141 67.4
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 2.1e-41 173.3 135 68.1
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 2.1e-41 173.3 138 64.5
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 2.7e-41 172.9 148 62.2
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 3.5e-41 172.6 140 65.0
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 3.5e-41 172.6 140 65.0
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 3.5e-41 172.6 141 66.7
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 3.5e-41 172.6 193 53.9
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 6.0e-41 171.8 137 65.7
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 7.9e-41 171.4 191 52.9
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 7.9e-41 171.4 151 64.9
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 1.8e-40 170.2 133 67.7
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 3.9e-40 169.1 186 59.1
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 3.9e-40 169.1 186 59.1
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 3.9e-40 169.1 130 68.5
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 5.1e-40 168.7 154 64.9
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 5.1e-40 168.7 154 64.9
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 8.7e-40 167.9 204 55.4
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 8.7e-40 167.9 133 65.4
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-39 167.5 193 55.4
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.1e-39 167.5 179 55.3
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 4.3e-39 165.6 193 54.9
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 4.3e-39 165.6 204 54.9
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 5.7e-39 165.2 198 55.1
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 5.7e-39 165.2 198 55.1
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 5.7e-39 165.2 198 55.1
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 5.7e-39 165.2 142 63.4
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 7.4e-39 164.9 171 56.7
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 9.6e-39 164.5 192 58.9
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 9.6e-39 164.5 148 62.8
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 1.6e-38 163.7 148 60.1
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 2.1e-38 163.3 203 52.7
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 6.3e-38 161.8 135 64.4
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 6.3e-38 161.8 149 59.7
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 6.3e-38 161.8 134 66.4
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 8.2e-38 161.4 220 48.6
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 1.4e-37 160.6 149 61.1
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 1.8e-37 160.2 176 53.4
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 2.4e-37 159.8 132 65.9
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 3.1e-37 159.5 148 58.8
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 4.1e-37 159.1 153 62.7
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 4.1e-37 159.1 229 45.9
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 5.3e-37 158.7 139 61.2
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 5.3e-37 158.7 189 49.2
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 6.9e-37 158.3 139 62.6
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.9e-37 158.3 139 62.6
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.2e-36 157.5 200 55.5
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.0e-36 156.8 139 61.9
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.6e-36 156.4 139 61.9
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 2.6e-36 156.4 175 54.3
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.4e-36 156.0 139 61.9
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 3.4e-36 156.0 130 63.8
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 5.9e-36 155.2 151 57.0
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 7.6e-36 154.8 137 61.3
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 7.6e-36 154.8 139 62.6
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.0e-35 154.5 130 64.6
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 1.0e-35 154.5 134 64.2
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.2e-35 153.3 142 60.6
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 2.2e-35 153.3 131 63.4
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 5.0e-35 152.1 144 59.7
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 5.0e-35 152.1 154 61.7
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.1e-34 151.0 138 58.7
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.1e-34 151.0 130 63.1
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 1.1e-34 151.0 130 61.5
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.2e-34 149.4 148 54.1
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 3.2e-34 149.4 195 54.9
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 4.2e-34 149.1 143 58.7
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 4.2e-34 149.1 135 60.0
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 1.6e-33 147.1 130 59.2
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 2.7e-33 146.4 126 61.9
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.0e-32 144.4 139 59.7
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 8.7e-32 141.4 198 53.5
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 1.5e-31 140.6 206 51.9
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 5.7e-31 138.7 146 54.1
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 9.7e-31 137.9 146 54.1
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 2.2e-30 136.7 130 57.7
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 4.8e-30 135.6 143 56.6
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.1e-29 134.4 133 57.9
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.0e-28 130.2 104 66.3
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 5.9e-28 128.6 201 43.3
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.9e-26 123.6 135 53.3
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 2.3e-24 116.7 189 45.5
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 6.7e-24 115.2 148 50.0
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 1.1e-23 114.4 131 53.4
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.2e-22 110.2 135 49.6
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 3.7e-22 109.4 110 58.2
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 4.8e-22 109.0 109 56.0
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 8.2e-22 108.2 145 49.0
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 8.8e-16 88.2 164 43.9
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 8.2e-14 81.6 67 67.2
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 5.3e-13 79.0 139 41.0
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 4.0e-08 62.8 60 63.3
A02p28470 Brassica napus HOM05D005256 ORTHO05D014960 2.8e-06 56.6 94 42.6
Mapoly0087s0006 Marchantia polymorpha HOM05D005256 ORTHO05D006491 4.8e-06 55.8 133 31.6
BraA02t07882Z Brassica rapa HOM05D005256 ORTHO05D023626 8.2e-06 55.1 94 42.6


User provided reference genes

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