Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 9.4e-141 503.4 242 100.0
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 8.0e-124 447.2 242 90.5
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 1.8e-120 436.0 247 87.9
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 4.1e-120 434.9 247 87.0
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 3.3e-117 425.2 245 86.5
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 3.4e-114 415.2 247 85.0
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 4.4e-114 414.8 246 85.4
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 8.3e-113 410.6 246 84.1
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 5.2e-107 391.3 251 80.5
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 6.4e-105 384.4 251 78.9
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 1.1e-99 367.1 217 85.7
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 2.3e-99 365.9 253 74.7
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 2.0e-98 362.8 188 93.1
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 8.1e-84 314.3 256 62.5
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 4.0e-83 312.0 256 62.9
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 6.9e-83 311.2 258 61.6
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 9.0e-83 310.8 258 61.2
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 1.5e-82 310.1 260 60.4
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 2.6e-82 309.3 258 61.2
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 4.4e-82 308.5 259 61.4
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 1.7e-81 306.6 260 60.8
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 1.7e-81 306.6 258 62.4
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 2.2e-81 306.2 256 62.1
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 2.9e-81 305.8 256 62.1
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 4.9e-81 305.1 262 62.2
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 6.4e-81 304.7 241 64.7
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 8.4e-81 304.3 262 59.9
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 8.4e-81 304.3 258 58.9
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 1.4e-80 303.5 259 61.0
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 1.9e-80 303.1 258 61.6
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 4.2e-80 302.0 260 60.4
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 4.2e-80 302.0 265 59.2
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 5.4e-80 301.6 243 61.7
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 7.1e-80 301.2 258 59.7
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 9.3e-80 300.8 245 60.0
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 1.6e-79 300.1 262 61.1
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 7.9e-79 297.7 254 59.8
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 2.3e-78 296.2 269 58.7
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 3.0e-78 295.8 262 58.0
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 1.1e-77 293.9 243 60.5
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 1.9e-77 293.1 245 60.0
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 1.9e-77 293.1 261 59.8
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 5.6e-77 291.6 262 57.3
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 1.6e-76 290.0 260 60.0
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 2.8e-76 289.3 261 59.0
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 3.6e-76 288.9 252 57.5
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 8.1e-76 287.7 262 59.9
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 2.4e-75 286.2 256 59.8
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 6.9e-75 284.6 262 57.3
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 6.9e-75 284.6 266 57.1
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 1.2e-74 283.9 261 58.2
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 1.2e-74 283.9 275 56.0
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 5.8e-74 281.6 245 58.8
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 7.6e-74 281.2 260 56.5
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.3e-73 280.4 255 58.4
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 1.3e-73 280.4 265 56.6
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 1.3e-73 280.4 265 56.6
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 1.7e-73 280.0 267 55.4
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 4.9e-73 278.5 256 56.6
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 6.4e-73 278.1 212 66.0
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 3.2e-72 275.8 260 55.4
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 5.4e-72 275.0 256 55.9
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 7.1e-72 274.6 252 56.7
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 1.2e-71 273.9 266 53.4
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 2.1e-71 273.1 222 65.3
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 1.8e-70 270.0 254 55.5
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 6.7e-70 268.1 270 53.0
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 1.1e-69 267.3 199 67.3
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 1.5e-69 266.9 228 61.0
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 1.4e-67 260.4 260 56.5
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 1.8e-67 260.0 294 50.7
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 2.0e-66 256.5 241 54.8
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 7.6e-66 254.6 255 53.3
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 2.9e-65 252.7 226 58.4
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 2.5e-64 249.6 252 53.2
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 4.2e-64 248.8 180 67.2
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 4.2e-64 248.8 272 52.6
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 5.5e-64 248.4 184 67.4
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 9.3e-64 247.7 256 48.0
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 1.6e-63 246.9 185 67.0
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 7.9e-63 244.6 260 52.3
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 3.0e-62 242.7 277 50.2
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 3.3e-61 239.2 197 61.4
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 2.8e-60 236.1 244 51.6
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 6.2e-60 235.0 255 47.5
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 6.9e-59 231.5 242 50.4
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 7.9e-55 218.0 198 61.1
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 3.3e-53 212.6 195 60.0
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 2.2e-49 199.9 243 49.4
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 3.8e-49 199.1 130 70.8
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.8e-49 199.1 190 58.4
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 3.2e-48 196.1 276 44.2
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 4.2e-48 195.7 197 53.8
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 2.1e-47 193.4 253 46.6
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 5.1e-46 188.7 193 57.0
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 9.7e-45 184.5 185 55.7
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 6.1e-39 165.2 317 37.2
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 2.3e-38 163.3 137 61.3
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.1e-37 161.0 154 55.2
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 5.9e-34 148.7 161 54.0
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 1.0e-33 147.9 247 39.3
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 6.5e-33 145.2 155 52.3
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.0e-30 137.9 131 58.8
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 2.3e-30 136.7 162 47.5
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 5.2e-30 135.6 155 52.9
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 1.1e-29 134.4 253 36.4
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 8.2e-28 128.3 105 53.3
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 5.3e-27 125.6 156 46.8
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 2.8e-20 103.2 183 34.4
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 3.5e-18 96.3 193 34.2
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 5.9e-18 95.5 64 67.2
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 1.0e-17 94.7 189 37.0
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 5.5e-16 89.0 65 64.6
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 8.8e-14 81.6 191 29.8
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 8.9e-06 55.1 242 25.2
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 8.9e-06 55.1 242 25.2


User provided reference genes

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