Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 7.3e-261 903.3 430 100.0
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 3.9e-246 854.4 431 95.8
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 1.2e-242 842.8 429 93.2
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 1.3e-238 829.3 423 92.4
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 2.8e-236 821.6 428 91.8
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 8.1e-236 820.1 429 90.7
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 5.8e-234 813.9 417 92.6
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 1.1e-232 809.7 427 89.7
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 1.1e-232 809.7 427 89.7
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 6.6e-230 800.4 429 89.0
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 1.2e-228 796.2 430 88.1
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 2.9e-217 758.4 419 86.4
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 1.0e-201 706.8 395 83.5
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 9.1e-179 630.6 403 71.7
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 3.5e-178 628.6 383 75.2
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 7.7e-178 627.5 406 72.7
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 2.2e-177 625.9 399 72.7
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 8.5e-177 624.0 379 75.7
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.4e-176 623.2 420 71.4
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 4.2e-176 621.7 386 74.1
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 4.2e-176 621.7 420 71.2
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 5.5e-176 621.3 420 71.2
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 2.1e-175 619.4 405 71.9
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 2.7e-175 619.0 390 72.8
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.0e-174 615.5 395 72.2
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 5.2e-174 614.8 399 71.4
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 1.1e-173 613.6 423 68.6
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 2.6e-173 612.5 408 70.6
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 4.4e-173 611.7 413 69.2
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 4.4e-173 611.7 390 72.6
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 7.4e-173 610.9 406 70.7
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 7.4e-173 610.9 398 71.4
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 3.7e-172 608.6 402 70.6
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 3.7e-172 608.6 398 69.1
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 2.4e-171 605.9 410 69.8
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 2.4e-171 605.9 421 67.5
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 9.1e-171 604.0 419 67.8
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 1.6e-170 603.2 396 70.7
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.0e-170 602.8 404 69.6
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 7.7e-170 600.9 399 70.2
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 1.0e-169 600.5 418 68.7
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.0e-169 600.5 415 68.7
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.3e-169 600.1 422 67.5
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.9e-169 599.0 390 70.8
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.5e-168 596.7 393 69.0
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 3.2e-168 595.5 410 67.8
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 9.4e-168 594.0 431 67.7
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.2e-167 593.6 384 72.1
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 2.7e-167 592.4 413 68.3
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 3.0e-166 589.0 423 67.4
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 5.2e-166 588.2 400 68.2
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 6.7e-166 587.8 421 66.5
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 6.7e-166 587.8 433 65.8
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 6.7e-166 587.8 403 67.7
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.5e-165 586.6 400 68.8
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 1.5e-165 586.6 397 70.0
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 4.4e-165 585.1 433 65.4
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 4.4e-165 585.1 380 72.1
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 4.4e-165 585.1 394 68.8
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.3e-164 583.6 383 70.2
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 6.3e-164 581.3 397 67.5
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 1.1e-163 580.5 425 66.1
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 1.1e-163 580.5 400 68.8
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 1.4e-163 580.1 384 70.6
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.8e-163 579.7 404 67.3
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.8e-163 579.7 372 72.3
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 3.1e-163 578.9 415 66.5
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.2e-162 577.0 406 67.0
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.2e-162 577.0 439 64.5
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.6e-162 576.6 395 68.1
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 2.7e-162 575.9 422 66.8
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 5.9e-162 574.7 421 67.0
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.2e-161 572.8 409 67.0
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 5.5e-160 568.2 407 66.8
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 7.2e-160 567.8 455 61.8
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 2.1e-159 566.2 397 67.0
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 2.1e-159 566.2 401 66.3
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 3.6e-159 565.5 364 72.3
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 3.0e-158 562.4 366 71.9
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 2.0e-157 559.7 410 66.3
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 9.8e-157 557.4 410 63.4
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 7.0e-155 551.2 407 64.9
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 1.6e-154 550.1 380 68.2
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 2.8e-148 529.3 385 66.2
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 3.1e-147 525.8 417 61.4
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 7.0e-147 524.6 367 65.9
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.6e-146 523.5 427 59.3
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.1e-144 517.3 420 57.9
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.3e-142 509.6 358 68.7
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 2.7e-138 496.1 415 56.9
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 6.2e-135 485.0 364 64.3
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 8.9e-134 481.1 369 60.4
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.2e-130 470.7 375 61.3
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.1e-123 445.7 326 65.3
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 5.4e-123 445.3 411 55.7
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 2.3e-121 439.9 300 69.7
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 8.6e-121 438.0 322 65.8
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 9.5e-120 434.5 381 57.2
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 3.6e-119 432.6 383 54.3
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 1.8e-118 430.3 287 71.4
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 3.1e-118 429.5 432 49.1
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.3e-116 424.1 430 49.1
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 7.9e-90 335.1 245 65.7
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.0e-89 334.7 229 66.8
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 3.1e-86 323.2 352 47.4
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.0e-85 320.5 278 56.1
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 6.5e-84 315.5 298 53.4
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.6e-82 310.8 402 41.8
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 4.3e-80 302.8 179 77.7
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 1.7e-76 290.8 470 38.7
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.9e-76 290.0 167 79.0
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.9e-76 290.0 167 79.0
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 6.7e-65 252.3 146 78.8
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.2e-50 204.9 127 77.2
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 1.2e-48 198.4 143 63.6
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 1.5e-48 198.0 217 52.5
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 4.4e-48 196.4 95 97.9
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 9.1e-46 188.7 293 38.2
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.2e-44 184.1 99 82.8
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.7e-39 167.9 115 70.4
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 1.7e-39 167.9 101 74.3
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 8.6e-36 155.6 87 78.2
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 8.6e-36 155.6 101 68.3
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 1.2e-34 151.8 89 71.9
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 3.2e-30 137.1 138 50.7
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 1.7e-28 131.3 80 68.8
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 4.1e-22 110.2 147 42.2
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 2.5e-19 100.9 206 35.9
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 2.0e-08 64.7 73 49.3
Migut.M00121 Erythranthe guttata HOM05D001610 ORTHO05D001585 2.6e-08 64.3 225 25.3
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 4.4e-08 63.5 235 24.3
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 4.4e-08 63.5 238 26.1
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 7.6e-08 62.8 241 28.6
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 9.9e-08 62.4 351 23.9
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 9.9e-08 62.4 238 25.6
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 9.9e-08 62.4 224 25.4
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 1.3e-07 62.0 219 27.9
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 1.3e-07 62.0 252 24.6
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 2.2e-07 61.2 238 25.2
DCAR_018378 Daucus carota HOM05D002999 ORTHO05D003137 4.9e-07 60.1 238 24.4
AagrBONN_evm.TU.Sc2ySwM_362.297 Anthoceros agrestis HOM05D002999 ORTHO05D003137 8.4e-07 59.3 251 24.7
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 1.4e-06 58.5 271 23.6
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 2.4e-06 57.8 206 24.3
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 2.4e-06 57.8 206 24.3
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 3.2e-06 57.4 205 24.9
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 3.2e-06 57.4 206 26.7
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 3.2e-06 57.4 150 28.0
HPP92_010630 Vanilla planifolia HOM05D002999 ORTHO05D003137 3.2e-06 57.4 243 22.6
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 3.2e-06 57.4 266 22.9
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 5.4e-06 56.6 206 26.2
C01p04290 Brassica napus HOM05D003825 ORTHO05D004491 5.4e-06 56.6 205 24.9
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 7.1e-06 56.2 205 25.4
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 7.1e-06 56.2 205 22.4
A01p03980 Brassica napus HOM05D003825 ORTHO05D004491 9.2e-06 55.8 205 24.9
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 9.2e-06 55.8 206 24.3
C07p60600 Brassica napus HOM05D003825 ORTHO05D004491 9.2e-06 55.8 206 26.2
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 9.2e-06 55.8 206 26.2
BraA01t00386Z Brassica rapa HOM05D003825 ORTHO05D004491 9.2e-06 55.8 205 24.9


User provided reference genes

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