Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 5.6e-70 267.7 155 100.0
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 2.1e-61 239.2 157 93.6
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 1.5e-46 189.9 154 79.2
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 9.6e-46 187.2 150 66.7
Thhalv10026499m.g Eutrema salsugineum HOM05D005932 ORTHO05D006213 1.3e-45 186.8 150 81.3
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 1.1e-44 183.7 150 68.0
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 1.2e-43 180.3 151 70.9
AL7G31630 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 3.8e-42 175.3 151 80.8
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 4.9e-42 174.9 149 64.4
Carub.0007s1967 Capsella rubella HOM05D005932 ORTHO05D006213 8.4e-42 174.1 140 85.7
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 2.1e-40 169.5 138 64.5
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 2.1e-40 169.5 151 64.2
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 4.6e-40 168.3 149 64.4
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 4.6e-40 168.3 149 64.4
A01p13050 Brassica napus HOM05D005932 ORTHO05D006213 4.0e-36 155.2 150 74.7
BraA01t01247Z Brassica rapa HOM05D005932 ORTHO05D006213 4.0e-36 155.2 150 74.7
Aa31LG6G3710 Aethionema arabicum HOM05D005932 ORTHO05D006213 9.0e-36 154.1 150 73.3
BcaC09g51211 Brassica carinata HOM05D005932 ORTHO05D006213 2.6e-27 125.9 150 67.3
C01p15720 Brassica napus HOM05D005932 ORTHO05D006213 2.6e-27 125.9 150 67.3
BolC1t01525H Brassica oleracea HOM05D005932 ORTHO05D006213 2.6e-27 125.9 150 67.3
THA.LOC104806292 Tarenaya hassleriana HOM05D001059 ORTHO05D000873 4.6e-24 115.2 133 66.2
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 4.2e-17 92.0 56 80.4
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 1.5e-14 83.6 147 38.8
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 1.9e-14 83.2 139 38.1
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 1.8e-12 76.6 135 38.5
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 4.1e-12 75.5 155 39.4
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 6.9e-12 74.7 138 34.8
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 9.0e-12 74.3 129 38.0
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.2e-11 73.9 155 38.7
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.5e-11 73.6 155 38.1
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 4.5e-11 72.0 131 42.7
THA.LOC104798624 Tarenaya hassleriana HOM05D012212 ORTHO05D006213 5.9e-11 71.6 144 50.7
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 1.0e-10 70.9 136 39.7
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 2.9e-10 69.3 130 36.2
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 2.9e-10 69.3 120 40.0
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 2.9e-10 69.3 151 33.1
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 3.8e-10 68.9 120 39.2
AL1G44550 Arabidopsis lyrata HOM05D012212 ORTHO05D006213 5.0e-10 68.6 124 46.0
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 6.5e-10 68.2 137 32.8
Thhalv10009012m.g Eutrema salsugineum HOM05D012212 ORTHO05D006213 6.5e-10 68.2 128 43.8
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 6.5e-10 68.2 123 43.9
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 1.1e-09 67.4 123 48.0
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 1.1e-09 67.4 124 36.3
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 1.4e-09 67.0 115 39.1
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.9e-09 66.6 137 37.2
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 3.2e-09 65.9 135 36.3
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 3.2e-09 65.9 129 34.9
Sp1g26360 Schrenkiella parvula HOM05D012212 ORTHO05D006213 3.2e-09 65.9 133 36.8
Aa31LG6G11760 Aethionema arabicum HOM05D012212 ORTHO05D006213 5.5e-09 65.1 157 46.5
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 5.5e-09 65.1 132 34.1
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 7.2e-09 64.7 148 36.5
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 7.2e-09 64.7 127 37.8
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 7.2e-09 64.7 124 35.5
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 9.4e-09 64.3 126 34.9
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 1.2e-08 63.9 118 39.8
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 1.2e-08 63.9 126 39.7
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 1.2e-08 63.9 119 35.3
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 1.6e-08 63.5 126 34.9
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 2.1e-08 63.2 112 42.9
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 2.1e-08 63.2 147 36.1
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 3.6e-08 62.4 129 32.6
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 6.1e-08 61.6 135 32.6
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 6.1e-08 61.6 148 35.1
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 7.9e-08 61.2 143 32.9
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 1.4e-07 60.5 109 45.0
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 1.4e-07 60.5 124 36.3
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 1.8e-07 60.1 118 37.3
BraA09t39118Z Brassica rapa HOM05D012212 ORTHO05D006213 2.3e-07 59.7 137 38.0
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 3.0e-07 59.3 134 32.8
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 3.0e-07 59.3 128 35.2
BcaB07g32687 Brassica carinata HOM05D012212 ORTHO05D006213 3.9e-07 58.9 135 35.6
C05p29520 Brassica napus HOM05D012212 ORTHO05D006213 3.9e-07 58.9 135 35.6
BolC5t31682H Brassica oleracea HOM05D012212 ORTHO05D006213 3.9e-07 58.9 135 35.6
Glyma.15G130200 Glycine max HOM05D005932 ORTHO05D006213 3.9e-07 58.9 137 40.1
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 3.9e-07 58.9 117 39.3
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 3.9e-07 58.9 121 33.1
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 5.1e-07 58.5 128 33.6
A09p35930 Brassica napus HOM05D012212 ORTHO05D006213 6.7e-07 58.2 135 34.1
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 6.7e-07 58.2 135 30.4
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 6.7e-07 58.2 130 35.4
Potri.001G371800 Populus trichocarpa HOM05D005932 ORTHO05D006213 6.7e-07 58.2 111 50.5
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 6.7e-07 58.2 132 30.3
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 8.8e-07 57.8 128 30.5
Medtr2g030220 Medicago truncatula HOM05D005932 ORTHO05D006213 8.8e-07 57.8 140 37.9
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 8.8e-07 57.8 129 41.9
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 8.8e-07 57.8 117 35.0
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.1e-06 57.4 118 36.4
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 1.1e-06 57.4 114 35.1
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 1.1e-06 57.4 144 29.9
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 1.1e-06 57.4 129 33.3
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.5e-06 57.0 118 35.6
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 1.5e-06 57.0 108 40.7
Migut.H01328 Erythranthe guttata HOM05D005932 ORTHO05D006213 3.3e-06 55.8 119 38.7
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 4.3e-06 55.5 124 33.9
AT1G30515 Arabidopsis thaliana HOM05D012212 ORTHO05D006213 5.7e-06 55.1 136 47.1
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 5.7e-06 55.1 112 34.8
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 7.4e-06 54.7 134 33.6
Psat1g167520 Pisum sativum HOM05D005932 ORTHO05D006213 7.4e-06 54.7 135 34.1
BcaB07g32663 Brassica carinata HOM05D012212 ORTHO05D006213 9.7e-06 54.3 136 33.8
CARHR029930 Cardamine hirsuta HOM05D012212 ORTHO05D006213 9.7e-06 54.3 126 51.6
Glyma.09G024200 Glycine max HOM05D005932 ORTHO05D006213 9.7e-06 54.3 129 49.6
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 9.7e-06 54.3 108 34.3


User provided reference genes

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