Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 6.1e-61 237.3 117 100.0
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 3.6e-53 211.5 117 88.9
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 4.7e-45 184.5 118 79.7
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 8.8e-44 180.3 117 81.2
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 1.3e-42 176.4 118 79.7
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 2.7e-40 168.7 118 77.1
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 2.5e-38 162.2 121 74.4
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 2.5e-38 162.2 121 74.4
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 2.5e-38 162.2 121 74.4
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 3.3e-38 161.8 120 74.2
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 4.7e-37 157.9 120 72.5
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 3.1e-33 145.2 117 70.9
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 4.0e-28 128.3 125 57.6
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 6.6e-23 110.9 110 53.6
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.0e-19 99.4 108 50.0
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 4.4e-19 98.2 112 53.6
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.3e-18 96.7 117 51.3
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 4.1e-17 91.7 111 49.5
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.4e-17 91.3 111 46.8
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.4e-17 91.3 111 46.8
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 7.0e-17 90.9 120 43.3
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.0e-17 90.9 111 46.8
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 9.2e-17 90.5 113 49.6
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 9.2e-17 90.5 115 48.7
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.2e-16 90.1 120 47.5
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.6e-16 89.7 115 47.8
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 2.7e-16 89.0 112 47.3
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 3.5e-16 88.6 112 47.3
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 3.5e-16 88.6 115 48.7
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 6.0e-16 87.8 109 47.7
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 7.8e-16 87.4 110 47.3
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.0e-15 87.0 108 46.3
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.7e-15 86.3 112 44.6
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 2.3e-15 85.9 115 47.0
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.0e-15 85.5 110 44.5
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 3.0e-15 85.5 110 46.4
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 5.1e-15 84.7 110 42.7
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.9e-14 82.8 118 44.1
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.5e-14 82.4 117 47.9
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.5e-14 82.4 111 45.9
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 3.3e-14 82.0 110 43.6
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 7.3e-14 80.9 110 45.5
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 7.3e-14 80.9 112 43.8
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 7.3e-14 80.9 110 44.5
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 9.5e-14 80.5 112 45.5
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 1.2e-13 80.1 113 41.6
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.6e-13 79.7 110 42.7
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 2.1e-13 79.3 112 43.8
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 3.6e-13 78.6 109 44.0
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 4.7e-13 78.2 115 41.7
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 6.2e-13 77.8 111 45.0
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 6.2e-13 77.8 119 42.9
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 8.1e-13 77.4 112 42.9
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 8.1e-13 77.4 110 41.8
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.4e-12 76.6 109 45.0
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.8e-12 76.3 112 44.6
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.3e-12 75.9 122 39.3
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 3.1e-12 75.5 116 41.4
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 6.8e-12 74.3 112 42.0
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 8.9e-12 73.9 109 43.1
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 2.0e-11 72.8 116 38.8
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 2.0e-11 72.8 116 38.8
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.6e-11 72.4 113 39.8
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.6e-11 72.4 113 39.8
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 2.6e-11 72.4 116 39.7
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 2.6e-11 72.4 116 38.8
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 3.4e-11 72.0 112 43.8
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 5.8e-11 71.2 113 37.2
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.7e-10 69.7 120 37.5
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.7e-10 69.7 110 41.8
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 2.2e-10 69.3 120 39.2
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.2e-10 69.3 110 36.4
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 2.2e-10 69.3 117 38.5
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 2.2e-10 69.3 109 39.4
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 2.2e-10 69.3 110 44.5
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 2.9e-10 68.9 119 38.7
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.7e-10 68.6 115 41.7
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 4.9e-10 68.2 114 39.5
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.4e-09 66.6 105 44.8
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.9e-09 66.2 122 36.1
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.9e-09 66.2 112 41.1
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 2.4e-09 65.9 108 38.9
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.2e-09 65.5 110 37.3
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 5.4e-09 64.7 124 34.7
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 7.1e-09 64.3 112 38.4
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.2e-08 63.5 110 37.3
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.2e-08 63.5 114 38.6
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 1.6e-08 63.2 112 41.1
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 2.1e-08 62.8 74 45.9
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 2.1e-08 62.8 112 36.6
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.7e-08 62.4 109 35.8
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 2.7e-08 62.4 120 35.8
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.7e-08 62.4 110 40.0
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.7e-08 62.4 110 40.0
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.5e-08 62.0 113 36.3
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 3.5e-08 62.0 122 41.0
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.5e-08 62.0 121 38.8
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 4.6e-08 61.6 116 37.9
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 6.0e-08 61.2 110 39.1
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.0e-07 60.5 114 36.0
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.0e-07 60.5 114 36.0
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.3e-07 60.1 114 38.6
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.7e-07 59.7 109 36.7
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 3.0e-07 58.9 104 39.4
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 6.6e-07 57.8 113 40.7
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.5e-06 56.6 117 36.8
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 2.5e-06 55.8 113 33.6
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 2.5e-06 55.8 112 33.9
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.3e-06 55.5 113 37.2
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 3.3e-06 55.5 112 34.8
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 4.3e-06 55.1 109 32.1
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.3e-06 55.1 112 33.0
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.6e-06 54.7 111 36.0
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 5.6e-06 54.7 111 36.0
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 7.3e-06 54.3 112 33.9
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 9.5e-06 53.9 118 35.6


User provided reference genes

Program Settings