Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 0.0e+00 2073.9 1119 100.0
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1942.9 1118 94.2
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1812.3 1120 89.3
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1809.3 1119 87.2
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1687.2 1178 78.6
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1675.2 1204 77.0
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1669.8 1195 77.4
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1666.7 1180 75.8
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 0.0e+00 1666.0 1133 82.3
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1649.4 1164 79.8
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1620.9 1181 78.2
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 0.0e+00 1600.5 1111 80.3
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 0.0e+00 1405.2 1206 68.7
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1292.7 1291 60.7
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 1.4e-292 1010.0 1231 48.1
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 6.2e-288 994.6 1287 49.4
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 9.0e-287 990.7 1195 49.5
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 3.8e-285 985.3 1272 47.0
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 8.4e-285 984.2 1245 49.6
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 1.2e-283 980.3 1122 54.2
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.4e-278 962.2 922 57.6
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 1.7e-277 959.9 1192 48.5
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 1.1e-276 957.2 1274 48.4
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 6.0e-275 951.4 1337 44.7
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 6.7e-274 948.0 1236 48.1
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 3.7e-272 942.2 1218 47.7
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 5.3e-271 938.3 1377 45.3
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 9.0e-271 937.6 1383 43.7
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 2.2e-269 932.9 1354 45.2
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 2.5e-268 929.5 1236 49.0
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 4.2e-268 928.7 1391 44.1
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 9.4e-268 927.5 1354 44.2
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 2.5e-265 919.5 1170 48.3
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 9.7e-265 917.5 1169 48.5
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 1.1e-263 914.1 1245 47.1
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 5.3e-263 911.8 1260 48.4
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.6e-259 899.0 905 55.8
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 1.4e-258 897.1 1286 47.3
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 3.9e-258 895.6 1195 47.1
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 5.7e-257 891.7 1337 42.8
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 9.7e-257 891.0 1135 48.5
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 3.1e-255 885.9 1232 45.6
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 7.0e-255 884.8 1203 46.9
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 9.1e-255 884.4 1347 42.2
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 1.2e-254 884.0 1208 49.3
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.5e-254 883.6 759 61.8
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 2.0e-254 883.2 1222 48.3
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 7.7e-254 881.3 1311 43.6
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 7.7e-254 881.3 1236 47.2
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 7.7e-254 881.3 1232 45.6
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 1.1e-252 877.5 1221 47.3
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 2.5e-252 876.3 1227 47.2
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 3.2e-252 875.9 1220 44.8
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 1.2e-251 874.0 1305 42.9
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 1.0e-250 870.9 1345 43.0
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.0e-250 870.9 1205 45.6
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 5.2e-250 868.6 1206 45.6
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 1.4e-247 860.5 1253 47.3
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 1.8e-247 860.1 1220 46.1
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 3.5e-246 855.9 1171 48.7
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 6.5e-245 851.7 1342 41.6
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 7.2e-244 848.2 911 51.8
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 1.2e-243 847.4 1199 46.1
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.6e-243 847.0 905 53.0
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 8.8e-242 841.3 1319 41.4
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 1.2e-241 840.9 1342 41.4
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.2e-241 840.9 907 52.0
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 3.3e-241 839.3 1374 41.6
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 1.7e-240 837.0 907 51.9
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 2.2e-240 836.6 1220 44.9
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 1.4e-239 833.9 1401 39.5
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 1.0e-237 827.8 913 51.4
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 1.0e-237 827.8 1269 44.0
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.5e-236 823.2 1190 45.7
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 2.6e-233 813.1 1354 41.3
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 7.5e-233 811.6 1345 43.2
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 1.4e-231 807.4 1253 43.8
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 4.5e-230 802.4 931 49.7
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 3.4e-225 786.2 1402 38.8
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 1.7e-224 783.9 886 51.1
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 3.6e-219 766.1 1121 44.1
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 1.8e-218 763.8 1130 43.5
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 9.8e-217 758.1 1185 46.1
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 7.0e-215 751.9 1121 43.5
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 2.6e-209 733.4 1325 39.1
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.9e-208 729.9 1246 43.9
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.6e-206 724.2 786 52.0
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.1e-202 711.4 1158 42.8
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 2.2e-200 703.7 1187 39.0
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 7.8e-182 642.1 546 62.5
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 1.5e-177 627.9 585 57.4
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 3.4e-169 600.1 1128 40.2
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 8.7e-157 558.9 682 47.5
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.3e-155 555.1 1083 40.3
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 5.9e-153 546.2 875 40.1
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 1.0e-152 545.4 1153 34.9
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 6.5e-136 489.6 1137 35.4
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 4.4e-132 476.9 1121 33.2
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 2.2e-131 474.6 928 35.8
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 2.5e-127 461.1 423 59.6
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.6e-118 431.8 1116 33.2
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 7.5e-108 396.4 555 44.3
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.4e-100 370.5 498 42.0
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.4e-100 370.5 1232 29.3
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 4.9e-99 367.1 503 40.8
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 1.4e-93 349.0 870 30.0
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 8.9e-93 346.3 724 39.2
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 1.2e-81 309.3 614 34.2
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.1e-79 302.8 324 48.1
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 2.4e-74 285.0 1258 27.3
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 5.4e-74 283.9 421 42.3
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.8e-44 184.1 698 27.4
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-42 177.9 697 25.0
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.3e-37 161.0 554 26.5
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 6.1e-33 147.5 351 29.9
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 7.7e-28 130.6 169 53.3
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 6.5e-27 127.5 359 28.1
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.2e-26 124.0 608 24.3
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 7.9e-25 120.6 324 37.3
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 3.3e-23 115.2 102 55.9
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.7e-22 111.7 250 41.2
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.6e-20 106.3 181 38.7
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 1.0e-19 103.6 74 66.2
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 2.2e-19 102.4 166 49.4
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 2.3e-16 92.4 171 35.7
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.8e-14 85.5 71 62.0
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 7.0e-13 80.9 336 40.8
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 1.2e-12 80.1 242 27.3
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.6e-12 79.7 90 48.9
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 4.5e-12 78.2 184 31.0
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.0e-11 77.0 399 22.6
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.2e-11 75.9 81 55.6
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.0e-11 74.7 486 22.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.6e-09 69.7 71 50.7
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 3.6e-09 68.6 52 63.5
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 9.8e-07 60.5 230 24.3


User provided reference genes

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