Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 1.2e-162 576.6 338 100.0
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 3.0e-145 518.8 346 89.0
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 5.2e-137 491.5 340 89.1
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 7.0e-134 481.1 341 82.1
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 2.1e-130 469.5 341 85.3
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 9.8e-128 460.7 338 78.4
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 6.3e-127 458.0 338 77.8
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.7e-125 452.6 338 78.7
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 4.5e-125 451.8 342 79.2
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 8.6e-124 447.6 340 77.9
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 8.6e-124 447.6 340 77.9
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 8.6e-124 447.6 340 77.9
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.6e-122 443.4 338 76.9
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 9.5e-115 417.5 338 76.0
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 3.2e-110 402.5 338 71.6
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 5.4e-110 401.7 355 76.1
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 3.5e-109 399.1 338 73.7
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 6.0e-93 345.1 362 67.1
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.9e-86 323.6 248 79.0
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.5e-83 313.2 357 61.9
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.3e-76 290.0 309 57.3
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.5e-75 287.3 353 62.0
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.7e-63 247.3 351 58.4
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.4e-62 244.2 360 53.1
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 3.2e-62 243.0 360 53.1
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 4.2e-62 242.7 380 48.2
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.1e-61 240.4 355 53.0
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 2.7e-61 240.0 345 58.3
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 7.9e-61 238.4 330 53.6
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.0e-60 238.0 362 53.9
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.8e-60 237.3 361 52.1
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 6.7e-60 235.3 333 54.1
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 8.7e-60 235.0 316 54.4
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.1e-59 234.6 370 53.0
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.5e-59 234.2 356 52.2
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.5e-59 233.4 348 54.6
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 3.3e-59 233.0 305 54.1
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 9.0e-57 224.9 376 50.5
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 9.0e-57 224.9 353 48.7
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.2e-56 224.6 360 50.8
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.5e-56 222.6 359 51.0
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.9e-56 222.2 375 45.3
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 7.6e-56 221.9 350 46.3
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.6e-56 221.9 338 51.2
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 7.6e-56 221.9 324 52.5
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 1.0e-55 221.5 283 58.0
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 2.9e-55 219.9 330 55.5
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 5.0e-55 219.2 289 55.4
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.9e-54 217.2 340 56.2
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 3.2e-54 216.5 320 52.8
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 7.2e-54 215.3 334 51.2
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 2.7e-53 213.4 333 52.3
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.7e-53 213.4 291 52.9
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 4.6e-53 212.6 336 53.3
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.8e-52 210.7 338 46.7
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 1.8e-52 210.7 355 54.4
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 3.9e-52 209.5 321 48.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 3.9e-52 209.5 336 49.4
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.5e-51 206.8 363 46.8
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 4.3e-51 206.1 347 50.1
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 5.7e-51 205.7 361 43.8
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 5.7e-51 205.7 340 52.9
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.7e-50 204.1 347 48.1
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 3.7e-50 203.0 337 43.3
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 4.8e-50 202.6 345 48.4
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 4.8e-50 202.6 330 43.6
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 1.1e-49 201.4 362 43.6
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.1e-49 201.4 341 51.9
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.4e-49 201.1 369 51.5
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.8e-49 200.7 326 51.2
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.8e-49 200.7 359 49.6
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.4e-49 200.3 379 42.0
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 3.1e-49 199.9 339 52.5
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.1e-49 199.5 366 48.9
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 4.1e-49 199.5 357 45.4
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 6.9e-49 198.7 355 52.1
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.5e-48 197.6 339 51.0
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 2.0e-48 197.2 351 47.3
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 2.6e-48 196.8 340 44.4
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 3.4e-48 196.4 332 52.4
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 4.5e-48 196.1 360 42.2
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 5.9e-48 195.7 244 50.8
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 7.7e-48 195.3 360 42.5
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.3e-47 194.5 314 52.2
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 6.5e-47 192.2 336 51.8
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.2e-46 188.7 301 48.5
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 7.2e-46 188.7 241 51.9
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 9.4e-46 188.3 330 49.4
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 9.4e-46 188.3 314 51.0
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 9.4e-46 188.3 312 47.8
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 9.4e-46 188.3 330 42.7
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 9.4e-46 188.3 363 43.3
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.6e-45 187.6 346 44.8
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.7e-45 186.8 272 55.1
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 7.9e-45 185.3 352 46.3
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 1.0e-44 184.9 153 68.0
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.0e-44 183.3 335 53.1
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 6.7e-44 182.2 307 45.9
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.7e-44 182.2 334 42.2
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.7e-44 182.2 359 46.0
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.1e-43 181.4 322 42.2
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.2e-42 177.2 307 49.5
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 3.7e-42 176.4 332 45.2
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.8e-42 176.0 332 41.3
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.1e-41 174.9 338 45.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.4e-41 174.5 308 51.3
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.8e-41 174.1 333 44.7
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.8e-41 174.1 323 41.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.4e-41 173.7 284 52.1
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 4.1e-41 172.9 347 46.1
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 4.1e-41 172.9 361 48.8
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 6.9e-41 172.2 287 42.2
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 6.9e-41 172.2 308 51.0
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 5.9e-40 169.1 312 53.2
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.9e-40 169.1 360 45.3
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 5.9e-40 169.1 345 40.6
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 8.5e-39 165.2 334 45.5
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 2.5e-38 163.7 313 44.4
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 5.5e-38 162.5 342 46.5
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 7.2e-38 162.2 300 49.0
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 6.1e-37 159.1 346 40.2
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 8.0e-37 158.7 268 50.7
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 8.8e-36 155.2 162 57.4
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.1e-35 154.8 249 55.8
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 2.2e-34 150.6 399 39.3
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 5.3e-33 146.0 272 40.4
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 9.1e-33 145.2 282 44.3
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.2e-32 144.8 409 37.2
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 2.0e-32 144.1 321 36.8
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 2.0e-32 144.1 279 43.0
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 7.7e-32 142.1 318 42.5
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 9.4e-30 135.2 341 37.5
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 2.7e-29 133.7 369 39.0
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 4.7e-29 132.9 149 53.0
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 8.8e-28 128.6 247 37.2
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.8e-28 128.6 302 44.4
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 4.8e-26 122.9 378 39.2
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 6.3e-26 122.5 351 33.0
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.1e-25 121.7 321 35.8
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-25 121.3 135 53.3
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.4e-25 120.6 294 36.4
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 2.4e-25 120.6 278 43.5
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 3.1e-25 120.2 343 40.5
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 4.1e-25 119.8 159 45.9
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 2.2e-23 114.0 357 39.8
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 1.5e-22 111.3 215 43.7
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 4.0e-20 103.2 348 33.3
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.2e-20 102.8 260 43.8
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.6e-19 100.5 114 55.3
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.4e-17 94.0 149 41.6
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.6e-16 91.3 209 36.8
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 2.0e-16 90.9 343 34.4
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.9e-16 89.4 270 43.3
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 4.9e-10 69.7 186 35.5
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 7.8e-08 62.4 94 46.8
AUR62021898 Chenopodium quinoa HOM05D004496 ORTHO05D005513 1.9e-06 57.8 68 51.5


User provided reference genes

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