Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 8.9e-61 236.9 131 100.0
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 2.5e-55 218.8 131 92.4
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 4.4e-52 208.0 131 83.2
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 5.4e-50 201.1 127 81.9
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 1.5e-47 193.0 131 73.3
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 2.5e-47 192.2 127 75.6
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 4.7e-46 188.0 127 78.7
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 6.2e-46 187.6 127 72.4
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 5.2e-45 184.5 127 72.4
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 5.2e-45 184.5 127 72.4
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 1.5e-44 183.0 127 71.7
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 2.7e-41 172.2 130 62.3
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 2.1e-38 162.5 142 59.2
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 1.2e-25 120.2 103 52.4
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 2.1e-25 119.4 93 55.9
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 2.1e-25 119.4 91 57.1
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 2.7e-25 119.0 91 57.1
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 3.5e-25 118.6 91 52.7
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 7.9e-25 117.5 93 53.8
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 1.0e-24 117.1 105 51.4
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 1.8e-24 116.3 93 53.8
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 3.9e-24 115.2 93 52.7
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 5.1e-24 114.8 105 51.4
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 6.7e-24 114.4 110 50.9
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.9e-23 112.8 80 62.5
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 1.9e-23 112.8 91 54.9
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 3.3e-23 112.1 93 51.6
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 4.3e-23 111.7 91 53.8
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 7.4e-23 110.9 102 51.0
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 9.6e-23 110.5 78 62.8
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 9.6e-23 110.5 83 60.2
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 9.6e-23 110.5 93 51.6
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 1.3e-22 110.2 95 48.4
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 1.3e-22 110.2 97 52.6
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 1.6e-22 109.8 91 49.5
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 2.1e-22 109.4 92 48.9
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 2.8e-22 109.0 92 52.2
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 3.7e-22 108.6 91 54.9
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 3.7e-22 108.6 93 51.6
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 4.8e-22 108.2 91 52.7
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 4.8e-22 108.2 91 51.6
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 4.8e-22 108.2 91 51.6
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 6.2e-22 107.8 91 49.5
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 6.2e-22 107.8 91 49.5
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 6.2e-22 107.8 94 52.1
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 1.4e-21 106.7 103 45.6
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 5.3e-21 104.8 94 50.0
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 5.3e-21 104.8 89 51.7
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 2.0e-20 102.8 91 52.7
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.0e-19 100.5 93 50.5
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.0e-19 100.5 88 50.0
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.0e-19 100.5 88 50.0
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 1.7e-19 99.8 96 50.0
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 2.9e-19 99.0 113 46.0
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 2.9e-19 99.0 98 50.0
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 1.9e-18 96.3 92 48.9
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 3.2e-18 95.5 95 43.2
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 3.2e-18 95.5 91 50.5
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 3.2e-18 95.5 92 48.9
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 2.7e-17 92.4 88 50.0
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 2.7e-17 92.4 104 40.4
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 3.5e-17 92.0 104 41.3
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.8e-16 89.7 103 44.7
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 3.9e-16 88.6 97 42.3
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 5.1e-16 88.2 87 48.3
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 1.5e-15 86.7 97 41.2
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 7.4e-15 84.3 94 45.7
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 1.4e-13 80.1 91 40.7
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 6.9e-13 77.8 61 54.1
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 1.2e-12 77.0 63 49.2
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 1.2e-12 77.0 65 49.2
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 1.4e-10 70.1 87 37.9
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 7.2e-10 67.8 61 45.9
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 1.5e-07 60.1 80 37.5
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 2.5e-07 59.3 54 44.4
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 9.7e-07 57.4 69 39.1
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 2.8e-06 55.8 93 35.5
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 2.8e-06 55.8 67 38.8


User provided reference genes

Program Settings