Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.6e-39 165.6 81 100.0
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 6.3e-33 143.7 80 86.2
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.1e-32 141.0 80 85.0
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 1.3e-30 136.0 80 82.5
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.9e-30 134.8 81 85.2
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 4.3e-29 131.0 80 81.2
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 3.6e-28 127.9 80 81.2
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 6.1e-28 127.1 80 80.0
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 1.4e-27 125.9 81 77.8
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.8e-27 125.6 80 78.8
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 1.8e-27 125.6 80 78.8
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 3.4e-26 121.3 80 76.2
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 7.5e-26 120.2 80 76.2
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 4.0e-19 97.8 82 64.6
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 1.3e-17 92.8 77 54.5
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 3.7e-17 91.3 78 53.8
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 4.9e-17 90.9 81 58.0
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 4.9e-17 90.9 77 61.0
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 4.9e-17 90.9 82 57.3
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 6.4e-17 90.5 76 53.9
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 8.3e-17 90.1 81 56.8
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 1.4e-16 89.4 80 55.0
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 1.4e-16 89.4 77 55.8
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.4e-16 89.4 78 56.4
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 3.2e-16 88.2 80 63.8
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 5.4e-16 87.4 76 53.9
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 5.4e-16 87.4 76 53.9
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 9.2e-16 86.7 80 53.8
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.2e-15 86.3 77 51.9
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 2.0e-15 85.5 77 50.6
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 2.0e-15 85.5 77 54.5
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 2.0e-15 85.5 78 55.1
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 3.5e-15 84.7 80 47.5
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 3.5e-15 84.7 77 50.6
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 4.6e-15 84.3 78 50.0
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 4.6e-15 84.3 76 52.6
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 6.0e-15 84.0 77 51.9
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 6.0e-15 84.0 76 52.6
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 6.0e-15 84.0 80 50.0
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 6.0e-15 84.0 78 51.3
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 6.0e-15 84.0 81 53.1
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 7.8e-15 83.6 78 55.1
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.0e-14 83.2 83 51.8
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.0e-14 83.2 83 51.8
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 1.3e-14 82.8 82 51.2
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 1.7e-14 82.4 77 51.9
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 1.7e-14 82.4 80 50.0
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.0e-14 81.6 75 50.7
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 3.0e-14 81.6 77 51.9
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 3.9e-14 81.3 80 50.0
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 5.0e-14 80.9 77 51.9
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 1.1e-13 79.7 76 47.4
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 1.1e-13 79.7 77 51.9
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.5e-13 79.3 78 50.0
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.5e-13 79.3 77 50.6
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.5e-13 79.3 76 50.0
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.5e-13 79.3 77 50.6
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.5e-13 79.3 81 50.6
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.9e-13 79.0 77 49.4
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 1.9e-13 79.0 81 49.4
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 2.5e-13 78.6 77 51.9
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 2.5e-13 78.6 75 49.3
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 2.5e-13 78.6 77 51.9
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 3.3e-13 78.2 85 51.8
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 3.3e-13 78.2 77 48.1
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 4.3e-13 77.8 76 50.0
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 4.3e-13 77.8 82 51.2
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 5.6e-13 77.4 79 50.6
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 5.6e-13 77.4 78 48.7
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.2e-12 76.3 87 44.8
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.2e-12 76.3 87 44.8
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 1.2e-12 76.3 82 52.4
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 2.1e-12 75.5 77 49.4
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 2.1e-12 75.5 77 42.9
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 2.1e-12 75.5 74 51.4
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 2.8e-12 75.1 80 47.5
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 3.6e-12 74.7 76 47.4
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 3.6e-12 74.7 79 45.6
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 6.2e-12 73.9 67 62.7
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 6.2e-12 73.9 76 48.7
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 6.2e-12 73.9 80 46.2
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 6.2e-12 73.9 76 48.7
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 6.2e-12 73.9 76 44.7
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 8.1e-12 73.6 76 47.4
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 8.1e-12 73.6 77 41.6
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.1e-11 73.2 76 48.7
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.4e-11 72.8 76 50.0
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 1.4e-11 72.8 80 45.0
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.8e-11 72.4 77 45.5
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.8e-11 72.4 77 45.5
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.8e-11 72.4 67 61.2
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 1.8e-11 72.4 80 46.2
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.8e-11 72.4 76 46.1
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.8e-11 72.4 76 46.1
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.8e-11 72.4 76 46.1
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.3e-11 72.0 77 45.5
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 2.3e-11 72.0 67 62.7
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.3e-11 72.0 67 61.2
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 3.1e-11 71.6 67 62.7
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 3.1e-11 71.6 67 62.7
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 3.1e-11 71.6 67 62.7
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 5.2e-11 70.9 67 61.2
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 5.2e-11 70.9 82 45.1
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 5.2e-11 70.9 78 46.2
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 5.2e-11 70.9 82 45.1
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.2e-11 70.9 82 45.1
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 5.2e-11 70.9 74 45.9
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 5.2e-11 70.9 78 46.2
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 5.2e-11 70.9 76 48.7
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 8.9e-11 70.1 77 46.8
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 8.9e-11 70.1 67 61.2
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 8.9e-11 70.1 80 43.8
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 8.9e-11 70.1 76 44.7
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.2e-10 69.7 76 46.1
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 1.2e-10 69.7 80 40.0
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.5e-10 69.3 80 43.8
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.5e-10 69.3 76 42.1
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.0e-10 68.9 67 61.2
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.0e-10 68.9 80 43.8
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 3.4e-10 68.2 78 44.9
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 5.8e-10 67.4 67 56.7
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 5.8e-10 67.4 76 43.4
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 7.5e-10 67.0 83 48.2
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 9.9e-10 66.6 67 59.7
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 9.9e-10 66.6 78 44.9
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.3e-09 66.2 76 46.1
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 1.7e-09 65.9 67 56.7
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.7e-09 65.9 67 56.7
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.7e-09 65.9 67 56.7
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 2.9e-09 65.1 76 40.8
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.7e-09 64.7 76 44.7
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 3.7e-09 64.7 67 55.2
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 3.7e-09 64.7 67 55.2
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.1e-08 63.2 77 44.2
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 1.1e-08 63.2 78 42.3
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 1.4e-08 62.8 82 46.3
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 3.2e-08 61.6 73 38.4
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 3.2e-08 61.6 75 44.0
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 9.2e-08 60.1 67 50.7
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 2.1e-07 58.9 79 43.0
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 3.5e-07 58.2 79 43.0
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 3.5e-07 58.2 56 48.2
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 7.8e-07 57.0 79 41.8
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 1.0e-06 56.6 78 38.5
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.3e-06 56.2 78 39.7
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 3.0e-06 55.1 79 36.7


User provided reference genes

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