Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 6.2e-103 377.5 191 100.0
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 1.4e-91 339.7 191 88.5
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 6.0e-90 334.3 194 88.7
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.2e-87 326.6 191 84.8
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 2.3e-86 322.4 193 85.5
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 1.1e-80 303.5 191 80.6
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 1.1e-80 303.5 191 80.6
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 1.5e-80 303.1 191 80.1
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 4.3e-80 301.6 191 79.6
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 4.3e-80 301.6 191 79.6
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 4.3e-80 301.6 191 79.6
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 5.4e-75 284.6 191 75.9
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 4.3e-72 275.0 200 74.5
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 5.4e-67 258.1 203 69.0
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 1.8e-54 216.5 188 61.7
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.2e-52 209.5 164 62.8
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.2e-52 209.5 164 64.0
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 4.9e-52 208.4 164 64.6
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 2.1e-50 203.0 191 59.7
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 6.0e-50 201.4 168 63.7
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 1.8e-49 199.9 179 59.2
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 2.3e-49 199.5 194 59.3
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 5.1e-49 198.4 165 61.8
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 1.5e-48 196.8 182 58.2
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.9e-48 196.4 182 58.2
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 5.7e-48 194.9 182 57.7
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 9.6e-48 194.1 141 68.8
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 1.3e-47 193.7 183 57.4
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 1.6e-47 193.4 138 69.6
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 1.6e-47 193.4 181 60.2
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 2.1e-47 193.0 180 56.1
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 2.8e-47 192.6 143 67.1
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 1.4e-46 190.3 186 57.5
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.8e-46 189.9 185 57.3
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 2.4e-46 189.5 190 56.8
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 2.4e-46 189.5 161 62.1
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.1e-46 189.1 170 59.4
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 4.1e-46 188.7 149 65.1
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 6.9e-46 188.0 185 57.3
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.9e-46 188.0 170 59.4
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 6.9e-46 188.0 135 71.1
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 9.0e-46 187.6 138 64.5
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 1.2e-45 187.2 136 69.9
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 1.2e-45 187.2 102 84.3
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 1.2e-45 187.2 178 57.9
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 2.6e-45 186.0 192 56.2
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 2.6e-45 186.0 102 83.3
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 3.4e-45 185.7 190 55.8
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 3.4e-45 185.7 134 70.9
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 3.4e-45 185.7 185 57.8
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 4.5e-45 185.3 109 78.9
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 5.9e-45 184.9 102 82.4
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 5.9e-45 184.9 151 62.3
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 7.6e-45 184.5 165 60.0
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 1.0e-44 184.1 165 59.4
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.0e-44 184.1 99 86.9
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.0e-44 184.1 149 62.4
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.0e-44 184.1 158 60.1
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 1.3e-44 183.7 154 59.7
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.3e-44 183.7 130 70.0
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.7e-44 183.3 126 70.6
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.2e-44 183.0 166 59.6
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 2.2e-44 183.0 142 63.4
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 2.9e-44 182.6 179 55.9
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 2.9e-44 182.6 120 71.7
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.8e-44 182.2 133 66.9
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 6.5e-44 181.4 128 68.8
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 6.5e-44 181.4 166 60.8
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 8.5e-44 181.0 135 66.7
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.4e-43 180.3 155 61.3
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 1.9e-43 179.9 140 67.1
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.9e-43 179.9 96 83.3
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 3.2e-43 179.1 102 80.4
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 4.2e-43 178.7 102 80.4
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 5.5e-43 178.3 162 58.6
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 7.2e-43 177.9 112 73.2
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.2e-42 177.2 184 51.1
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 2.1e-42 176.4 144 62.5
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 3.6e-42 175.6 183 50.3
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 3.9e-41 172.2 123 69.9
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 5.1e-41 171.8 93 82.8
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 2.2e-39 166.4 194 51.5
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 6.3e-39 164.9 121 67.8
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 8.2e-39 164.5 145 58.6
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.1e-38 164.1 134 61.2
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 1.4e-38 163.7 101 74.3
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 1.2e-37 160.6 129 66.7
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 7.7e-37 157.9 88 79.5
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 2.9e-36 156.0 121 65.3
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 5.0e-36 155.2 174 52.9
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 7.2e-35 151.4 139 59.0
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 7.2e-35 151.4 94 75.5
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 8.8e-33 144.4 82 78.0
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.1e-32 144.1 164 51.2
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 2.6e-32 142.9 106 64.2
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 7.4e-32 141.4 130 56.9
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.3e-31 140.6 76 82.9
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 2.4e-30 136.3 143 53.1
Thhalv10027121m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.0e-28 131.0 104 71.2
AL3G39740 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 2.2e-28 129.8 73 91.8
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 3.2e-27 125.9 95 57.9
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.6e-26 123.6 141 46.8
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 7.9e-26 121.3 95 56.8
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 1.0e-25 120.9 139 49.6
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 4.4e-24 115.5 74 81.1
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 4.4e-24 115.5 74 81.1
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 1.8e-22 110.2 95 50.5
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 2.0e-21 106.7 94 60.6
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.5e-21 105.9 93 61.3
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.5e-21 105.9 93 61.3
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.5e-21 105.9 93 61.3
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 3.5e-21 105.9 69 76.8
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 4.5e-21 105.5 139 38.1
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 5.9e-21 105.1 137 50.4
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 3.8e-20 102.4 49 85.7
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 2.5e-19 99.8 55 76.4
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 3.2e-19 99.4 88 56.8
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 1.2e-18 97.4 55 81.8
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 6.1e-18 95.1 80 58.8
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 1.0e-17 94.4 124 44.4
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 6.7e-17 91.7 50 86.0
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 4.4e-16 89.0 54 85.2
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.4e-14 84.0 47 80.9
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.4e-14 84.0 137 38.0
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-12 76.3 49 69.4
C03p29830 Brassica napus HOM05D002423 ORTHO05D002632 2.0e-08 63.5 46 78.3
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 7.5e-08 61.6 105 41.9
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 2.2e-07 60.1 59 61.0
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 3.7e-07 59.3 40 75.0
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 6.3e-07 58.5 69 44.9


User provided reference genes

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