Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 5.3e-37 157.1 77 100.0
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 9.3e-34 146.4 78 92.3
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.9e-32 141.0 77 88.3
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 4.8e-30 134.0 77 85.7
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 6.9e-29 130.2 77 84.4
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.2e-28 129.4 77 84.4
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 4.5e-28 127.5 77 81.8
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 3.8e-27 124.4 78 82.1
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 8.4e-27 123.2 76 78.9
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 3.2e-26 121.3 78 80.8
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 2.1e-25 118.6 75 77.3
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 2.3e-24 115.2 77 79.2
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 3.9e-24 114.4 78 78.2
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 3.9e-24 114.4 78 78.2
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 5.1e-24 114.0 75 74.7
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.5e-23 112.5 73 79.5
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 7.4e-23 110.2 72 79.2
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 9.6e-23 109.8 85 68.2
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.6e-22 109.0 72 77.8
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.2e-18 94.7 80 61.2
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.5e-18 94.0 80 61.2
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 5.5e-18 94.0 80 61.2
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-17 92.4 80 60.0
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.6e-17 92.4 80 60.0
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.6e-17 92.4 80 61.2
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 2.1e-17 92.0 80 58.8
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.6e-17 90.9 80 60.0
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 6.1e-17 90.5 80 61.2
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 7.9e-17 90.1 76 60.5
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.3e-16 89.4 80 56.2
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.3e-16 88.6 73 60.3
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.3e-16 88.6 73 60.3
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 2.3e-16 88.6 73 60.3
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.0e-16 88.2 73 60.3
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.9e-16 87.8 82 58.5
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.9e-16 87.8 81 56.8
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 5.1e-16 87.4 82 57.3
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 8.7e-16 86.7 81 56.8
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 8.7e-16 86.7 78 55.1
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 1.5e-15 85.9 78 57.7
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 1.5e-15 85.9 77 57.1
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.5e-15 85.9 81 54.3
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.5e-15 85.9 79 54.4
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.9e-15 85.5 73 61.6
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.9e-15 85.5 73 61.6
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.9e-15 85.5 77 58.4
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 1.9e-15 85.5 77 57.1
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.3e-15 84.7 81 55.6
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.3e-15 84.7 74 56.8
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 4.3e-15 84.3 75 58.7
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 4.3e-15 84.3 79 55.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 5.7e-15 84.0 75 57.3
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.7e-15 84.0 75 58.7
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 7.4e-15 83.6 77 57.1
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.3e-14 82.8 77 57.1
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 1.6e-14 82.4 77 57.1
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.2e-14 82.0 74 56.8
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 2.8e-14 81.6 70 62.9
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 4.8e-14 80.9 71 59.2
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 6.3e-14 80.5 80 55.0
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 8.2e-14 80.1 76 53.9
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 8.2e-14 80.1 75 54.7
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 8.2e-14 80.1 70 55.7
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 8.2e-14 80.1 80 52.5
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.1e-13 79.7 75 57.3
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 1.1e-13 79.7 76 56.6
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.1e-13 79.7 73 52.1
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.4e-13 79.3 82 50.0
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.4e-13 78.6 79 51.9
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.4e-13 78.6 83 51.8
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.4e-13 78.6 70 57.1
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.4e-13 78.6 83 49.4
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 2.4e-13 78.6 83 49.4
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 3.1e-13 78.2 75 54.7
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 3.1e-13 78.2 80 51.2
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.1e-13 78.2 77 51.9
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.1e-13 78.2 78 51.3
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 4.1e-13 77.8 76 52.6
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.1e-13 77.8 75 57.3
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 4.1e-13 77.8 78 51.3
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.9e-13 77.0 67 58.2
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 9.1e-13 76.6 81 53.1
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 9.1e-13 76.6 77 57.1
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 9.1e-13 76.6 83 49.4
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 9.1e-13 76.6 85 50.6
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.2e-12 76.3 76 51.3
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.5e-12 75.9 79 50.6
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.0e-12 75.5 74 55.4
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.0e-12 75.5 77 51.9
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.0e-12 75.5 77 51.9
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 2.0e-12 75.5 71 56.3
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.4e-12 74.7 74 54.1
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 3.4e-12 74.7 75 54.7
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.4e-12 74.7 79 49.4
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.5e-12 74.3 82 53.7
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 4.5e-12 74.3 76 52.6
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 5.9e-12 73.9 85 49.4
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.7e-12 73.6 79 49.4
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.3e-11 72.8 77 50.6
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.3e-11 72.8 70 54.3
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.7e-11 72.4 78 53.8
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.2e-11 72.0 81 50.6
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 2.2e-11 72.0 79 48.1
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.9e-11 71.6 74 54.1
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.9e-11 71.6 73 53.4
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.0e-11 70.9 91 48.4
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 5.0e-11 70.9 69 59.4
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 5.0e-11 70.9 89 46.1
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 6.5e-11 70.5 78 48.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 8.5e-11 70.1 72 54.2
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 1.1e-10 69.7 74 52.7
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-10 69.7 76 47.4
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.4e-10 69.3 82 46.3
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.9e-10 68.9 76 47.4
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.9e-10 68.9 91 46.2
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.9e-10 68.9 73 52.1
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.9e-10 68.9 84 45.2
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.5e-10 68.6 79 49.4
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.5e-10 68.6 86 47.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.5e-10 68.6 91 46.2
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.5e-10 68.6 73 54.8
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 3.2e-10 68.2 71 50.7
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 3.2e-10 68.2 81 50.6
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 4.2e-10 67.8 79 49.4
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.2e-10 67.8 79 50.6
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.2e-10 67.8 91 45.1
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 4.2e-10 67.8 76 46.1
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 4.2e-10 67.8 83 45.8
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 5.5e-10 67.4 79 49.4
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 5.5e-10 67.4 82 47.6
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 7.2e-10 67.0 82 43.9
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 7.2e-10 67.0 84 50.0
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 7.2e-10 67.0 82 48.8
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 7.2e-10 67.0 80 48.8
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 9.4e-10 66.6 85 48.2
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 9.4e-10 66.6 85 47.1
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.4e-10 66.6 76 46.1
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 1.2e-09 66.2 49 61.2
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.6e-09 65.9 74 48.6
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 1.6e-09 65.9 82 46.3
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 2.1e-09 65.5 76 47.4
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.1e-09 65.5 71 52.1
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.7e-09 65.1 98 39.8
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.6e-09 64.7 71 52.1
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 4.6e-09 64.3 80 48.8
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 6.1e-09 63.9 79 48.1
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 6.1e-09 63.9 79 41.8
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 7.9e-09 63.5 79 46.8
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.9e-09 63.5 88 42.0
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.4e-08 62.8 79 45.6
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.3e-08 62.0 79 45.6
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 5.1e-08 60.8 78 46.2
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 8.8e-08 60.1 78 42.3
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-07 59.3 71 43.7
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 4.4e-07 57.8 84 39.3
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 5.7e-07 57.4 95 37.9
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.7e-06 55.8 54 51.9
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 2.2e-06 55.5 80 45.0
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 2.2e-06 55.5 80 45.0
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 4.8e-06 54.3 78 39.7
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 6.3e-06 53.9 80 41.2


User provided reference genes

Program Settings