Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 7.2e-136 487.3 251 100.0
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 1.7e-129 466.1 251 93.6
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 1.2e-122 443.4 251 92.4
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 9.2e-115 417.2 252 87.3
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 3.5e-114 415.2 251 84.1
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 1.2e-109 400.2 252 82.9
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 1.7e-108 396.4 251 82.9
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 2.3e-105 386.0 251 79.7
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 1.9e-104 382.9 251 81.7
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 3.3e-104 382.1 252 82.5
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 3.3e-104 382.1 251 80.5
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 1.2e-103 380.2 251 80.1
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 8.9e-102 374.0 262 76.3
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 7.6e-101 370.9 252 79.4
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 2.1e-98 362.8 251 77.7
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 1.3e-95 353.6 254 72.8
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 2.8e-87 325.9 202 84.2
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 4.3e-72 275.4 242 60.3
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.7e-71 272.3 243 60.9
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 6.2e-71 271.6 246 57.3
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 6.2e-71 271.6 246 57.3
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 6.2e-71 271.6 241 59.8
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 3.1e-70 269.2 245 58.4
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 6.9e-70 268.1 242 60.3
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.2e-69 267.3 247 57.1
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 2.6e-69 266.2 245 56.7
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.6e-69 266.2 245 60.0
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 2.6e-69 266.2 242 57.0
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.6e-69 264.6 245 60.0
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 7.6e-69 264.6 246 56.1
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.0e-68 264.2 245 60.0
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.3e-68 263.8 247 56.7
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 2.2e-68 263.1 242 57.9
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 3.8e-68 262.3 242 57.9
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 5.0e-68 261.9 254 55.1
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 1.1e-67 260.8 246 56.1
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 1.9e-67 260.0 251 56.6
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 5.5e-67 258.5 243 58.0
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 1.2e-66 257.3 239 57.7
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 1.6e-66 256.9 249 55.8
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 2.1e-66 256.5 240 54.6
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 2.1e-66 256.5 241 55.6
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 6.1e-66 255.0 248 56.0
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 1.0e-65 254.2 239 56.5
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 2.3e-65 253.1 249 54.6
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 3.0e-65 252.7 244 56.1
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 3.3e-64 249.2 243 60.1
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 5.7e-64 248.4 237 56.5
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 5.7e-64 248.4 240 52.9
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 7.4e-64 248.1 229 55.9
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 9.7e-64 247.7 248 54.8
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 9.7e-64 247.7 230 57.4
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 1.3e-63 247.3 238 55.0
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 1.3e-63 247.3 184 66.8
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 2.2e-63 246.5 240 58.3
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 2.8e-63 246.1 228 57.0
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 4.8e-63 245.4 250 52.8
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 8.2e-63 244.6 240 56.2
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.1e-62 244.2 232 54.7
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 1.1e-62 244.2 232 55.6
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 2.4e-62 243.0 247 55.5
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 2.4e-62 243.0 247 52.2
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 4.1e-62 242.3 244 54.5
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 6.9e-62 241.5 188 66.0
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 9.0e-62 241.1 240 55.4
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 2.0e-61 240.0 234 59.0
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 4.5e-61 238.8 244 58.2
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 4.5e-61 238.8 223 58.3
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 5.9e-61 238.4 248 52.8
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.7e-60 236.9 245 53.5
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 6.5e-60 235.0 245 53.5
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 6.5e-60 235.0 239 53.1
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 8.5e-60 234.6 232 55.2
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 3.2e-59 232.6 246 52.4
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 7.2e-59 231.5 246 52.4
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.2e-58 230.7 243 50.6
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 4.6e-58 228.8 263 48.3
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 6.1e-58 228.4 181 63.5
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 3.9e-57 225.7 263 49.4
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 6.7e-57 224.9 230 52.2
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 1.5e-56 223.8 213 56.8
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 2.0e-56 223.4 229 54.6
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.1e-54 217.6 171 74.3
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.1e-54 217.6 171 74.3
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 2.4e-54 216.5 171 73.7
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 6.9e-54 214.9 245 53.5
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 3.4e-53 212.6 185 60.0
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.0e-52 211.1 249 49.4
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 2.2e-52 209.9 251 50.2
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.9e-52 209.5 205 53.7
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.9e-52 209.5 205 53.7
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 1.4e-49 200.7 241 46.1
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 2.0e-48 196.8 196 53.1
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 5.7e-48 195.3 137 69.3
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 1.1e-46 191.0 232 46.6
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 1.8e-46 190.3 192 52.6
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 7.2e-43 178.3 246 45.9
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 2.2e-39 166.8 218 43.1
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 3.5e-37 159.5 186 47.8
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 4.5e-37 159.1 197 44.2
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 2.2e-36 156.8 230 40.9
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 4.4e-32 142.5 206 43.7
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 1.3e-23 114.4 133 48.1
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 2.8e-23 113.2 135 46.7
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 1.4e-22 110.9 132 47.7
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 9.2e-22 108.2 121 46.3
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 9.2e-22 108.2 190 41.1
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 9.2e-22 108.2 190 41.1
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 3.5e-21 106.3 140 48.6
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 4.5e-21 105.9 251 34.7
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 7.7e-21 105.1 140 45.7
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 2.9e-20 103.2 157 40.8
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 3.8e-20 102.8 137 46.7
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 4.3e-19 99.4 142 45.1
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 9.5e-19 98.2 170 36.5
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 8.0e-18 95.1 126 43.7
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 8.0e-18 95.1 137 42.3
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.4e-17 94.4 119 45.4
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 9.8e-16 88.2 104 50.0
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 6.4e-15 85.5 152 35.5
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.8e-14 84.0 128 39.8
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 5.9e-13 79.0 86 52.3
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 3.3e-11 73.2 128 35.9
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 1.0e-09 68.2 64 53.1
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 7.0e-06 55.5 47 61.7


User provided reference genes

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