Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 3.2e-136 488.4 248 100.0
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 9.7e-125 450.3 245 92.7
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 3.4e-122 441.8 248 90.3
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 8.0e-119 430.6 248 88.7
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 5.2e-118 427.9 247 87.0
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 2.3e-110 402.5 252 82.5
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 6.7e-110 401.0 251 82.1
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 6.7e-110 401.0 251 82.1
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.5e-109 399.8 247 83.4
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.3e-108 396.7 252 81.0
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 1.7e-108 396.4 246 82.5
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 4.8e-108 394.8 243 82.3
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 5.0e-105 384.8 250 78.8
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 4.8e-100 368.2 231 82.7
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 3.3e-96 355.5 185 94.6
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.0e-90 336.3 243 72.4
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 3.6e-87 325.5 239 69.9
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.2e-85 320.5 244 68.9
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 4.4e-85 318.5 244 68.4
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.7e-84 315.5 237 65.8
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 3.7e-84 315.5 246 66.3
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.9e-84 315.1 237 65.8
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.4e-83 313.5 244 66.8
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.4e-83 313.5 244 66.0
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.4e-83 313.5 237 69.2
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 3.2e-83 312.4 242 67.4
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.1e-83 312.0 253 64.4
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 4.1e-83 312.0 234 67.9
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 9.2e-83 310.8 239 65.3
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.6e-82 310.1 247 66.4
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.6e-82 310.1 247 66.0
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.0e-82 309.7 246 67.1
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.0e-82 309.7 246 67.1
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.0e-82 309.7 244 63.9
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 2.0e-82 309.7 245 65.7
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.7e-82 309.3 238 68.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.7e-82 309.3 258 64.7
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 3.5e-82 308.9 246 65.9
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.5e-82 308.9 244 66.0
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 7.8e-82 307.8 244 63.9
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 7.8e-82 307.8 244 65.6
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.7e-81 306.6 242 66.5
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 2.3e-81 306.2 249 63.9
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.1e-80 303.9 237 68.4
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.5e-80 303.5 247 64.0
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.5e-80 303.5 245 64.5
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.9e-80 303.1 198 79.3
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 2.5e-80 302.8 251 64.1
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.3e-80 302.4 240 64.6
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 3.3e-80 302.4 249 62.7
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 5.6e-80 301.6 236 66.9
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 7.3e-80 301.2 259 64.5
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 9.5e-80 300.8 237 67.5
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-79 300.1 249 63.5
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 2.8e-79 299.3 233 66.1
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 2.8e-79 299.3 239 63.6
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 4.7e-79 298.5 248 64.5
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 6.2e-79 298.1 229 68.6
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 6.2e-79 298.1 236 64.4
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.1e-78 297.4 257 62.6
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.3e-78 296.2 236 64.4
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 6.8e-78 294.7 221 67.4
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 8.9e-78 294.3 245 64.9
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 8.9e-78 294.3 245 64.9
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.5e-77 293.5 257 61.5
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.5e-77 293.5 247 61.5
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 1.5e-77 293.5 233 63.9
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 2.6e-77 292.7 227 67.8
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.4e-77 292.4 245 61.2
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 7.5e-77 291.2 237 64.1
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 7.5e-77 291.2 245 64.1
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.3e-76 290.4 187 76.5
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.7e-76 290.0 221 67.4
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 3.7e-76 288.9 224 70.1
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 3.7e-76 288.9 224 70.1
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 4.9e-76 288.5 235 64.7
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 6.4e-76 288.1 245 61.2
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 6.4e-76 288.1 235 63.0
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 8.3e-76 287.7 246 62.2
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 2.4e-75 286.2 245 62.9
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.7e-74 282.7 191 74.3
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 4.6e-74 282.0 243 60.9
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.6e-74 282.0 265 58.5
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 6.0e-74 281.6 227 63.9
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 6.0e-74 281.6 247 58.7
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.8e-74 281.2 184 73.9
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 2.3e-73 279.6 176 77.8
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 3.9e-73 278.9 235 61.3
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.5e-72 276.9 234 62.0
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.5e-72 276.2 187 70.6
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.5e-72 276.2 251 57.4
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.3e-72 275.4 188 70.7
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 5.6e-72 275.0 188 73.9
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 5.6e-72 275.0 185 73.0
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 5.6e-72 275.0 234 62.0
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.3e-72 274.6 185 71.4
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 7.3e-72 274.6 248 57.7
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 7.3e-72 274.6 233 60.9
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.6e-71 273.5 234 61.5
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 6.2e-71 271.6 233 59.2
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 6.2e-71 271.6 229 61.6
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 6.2e-71 271.6 189 71.4
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.1e-70 270.8 237 62.0
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.1e-70 270.8 269 56.9
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 1.4e-70 270.4 188 69.7
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.8e-70 270.0 233 59.2
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.1e-70 269.2 239 57.7
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 8.9e-70 267.7 178 75.3
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.4e-69 265.8 185 72.4
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 9.9e-69 264.2 231 58.9
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 2.9e-68 262.7 277 54.2
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 2.9e-68 262.7 239 59.4
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 3.7e-68 262.3 233 58.8
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-67 260.8 222 62.6
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.4e-67 259.6 262 54.6
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.1e-67 258.8 171 74.3
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 9.2e-67 257.7 219 64.8
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.1e-66 256.5 265 54.7
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.1e-66 256.5 265 54.3
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.7e-66 256.1 234 59.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.0e-65 254.2 194 65.5
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 1.7e-65 253.4 191 67.0
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 3.0e-65 252.7 176 68.2
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 5.1e-65 251.9 180 69.4
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.1e-64 250.8 178 68.0
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 7.3e-64 248.1 225 56.0
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 9.5e-64 247.7 226 56.2
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 8.1e-63 244.6 179 64.2
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 2.4e-62 243.0 156 75.0
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 3.1e-62 242.7 187 62.6
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 5.2e-62 241.9 235 54.9
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 1.2e-61 240.7 178 68.5
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.4e-61 239.2 187 65.8
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.4e-61 239.2 321 45.2
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 5.8e-61 238.4 170 67.6
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 5.8e-61 238.4 170 67.6
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 5.8e-61 238.4 171 67.8
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 7.6e-61 238.0 245 55.1
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.4e-59 233.0 162 69.1
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 5.4e-59 231.9 170 67.1
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.7e-58 229.6 151 71.5
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 8.1e-55 218.0 225 53.8
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.9e-54 214.9 137 75.9
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.6e-53 213.0 139 73.4
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-52 210.7 141 69.5
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.7e-52 210.3 127 78.0
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.9e-51 206.8 167 67.7
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 2.3e-49 199.9 119 72.3
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.9e-43 180.3 125 69.6
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 5.3e-38 162.2 157 51.6
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.3e-36 157.5 116 68.1
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.3e-33 147.5 215 40.9
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.3e-20 104.4 155 40.6
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.9e-20 103.2 96 53.1
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.4e-17 94.4 108 58.3
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 3.0e-17 93.2 77 58.4
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.7e-15 87.4 244 28.7
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 3.7e-15 86.3 67 59.7
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 4.5e-13 79.3 48 64.6


User provided reference genes

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