Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.4e-102 376.3 196 100.0
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 4.0e-89 331.6 196 91.3
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 6.6e-68 261.2 204 74.5
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 9.5e-67 257.3 200 74.5
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 4.4e-64 248.4 199 70.4
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 3.8e-55 218.8 199 65.8
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 4.2e-54 215.3 206 64.1
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 5.8e-48 194.9 255 51.0
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 4.3e-43 178.7 310 42.6
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 4.5e-40 168.7 126 77.0
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 3.9e-36 155.6 212 49.5
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.5e-35 153.7 300 40.3
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.5e-35 153.7 178 51.7
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.6e-34 150.2 215 47.9
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 8.1e-34 147.9 218 48.6
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.4e-33 147.1 220 46.8
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 1.4e-33 147.1 214 46.7
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 2.0e-32 143.3 218 48.2
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.4e-32 142.5 223 46.2
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 8.4e-31 137.9 125 64.8
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.9e-30 136.7 219 45.7
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 3.9e-28 129.0 126 63.5
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 5.1e-28 128.6 185 51.4
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 4.8e-26 122.1 239 43.1
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 5.3e-25 118.6 200 47.0
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 3.4e-24 115.9 196 44.4
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 2.2e-23 113.2 203 43.3
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 6.5e-23 111.7 126 55.6
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 4.2e-22 109.0 195 43.6
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 9.3e-22 107.8 171 45.0
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.7e-21 106.3 198 42.4
CARHR231330 Cardamine hirsuta HOM05D005115 ORTHO05D005703 6.0e-21 105.1 76 75.0
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 6.0e-21 105.1 204 42.2
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 6.0e-21 105.1 194 42.3
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.8e-20 103.6 199 42.7
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 2.3e-20 103.2 174 46.6
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.0e-20 102.8 191 42.4
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 3.0e-20 102.8 197 42.1
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 5.1e-20 102.1 170 44.7
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.1e-20 102.1 172 45.3
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 6.7e-20 101.7 207 42.5
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.1e-19 100.9 196 42.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.1e-19 100.9 209 39.7
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.5e-19 100.5 202 40.6
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.3e-19 99.4 201 38.8
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 5.7e-19 98.6 209 39.2
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 7.4e-19 98.2 181 44.8
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 7.4e-19 98.2 181 44.8
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.3e-18 97.4 170 42.4
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.3e-18 97.4 202 42.6
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.2e-18 96.7 209 39.2
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.2e-18 96.7 209 39.2
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 2.2e-18 96.7 206 41.3
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.2e-18 96.7 177 43.5
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 3.7e-18 95.9 199 40.7
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 4.8e-18 95.5 201 39.3
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 4.8e-18 95.5 201 41.3
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 6.3e-18 95.1 172 44.8
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 6.3e-18 95.1 176 42.0
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.3e-18 95.1 205 39.5
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.3e-18 95.1 203 38.9
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 8.2e-18 94.7 178 42.1
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 8.2e-18 94.7 180 41.7
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 8.2e-18 94.7 174 43.1
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.4e-17 94.0 202 40.6
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.8e-17 93.6 203 39.9
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 2.4e-17 93.2 178 42.7
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 3.1e-17 92.8 176 43.2
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 5.3e-17 92.0 198 39.9
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.9e-17 91.7 198 40.9
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 6.9e-17 91.7 178 41.6
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.9e-17 91.7 175 42.3
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 6.9e-17 91.7 204 39.2
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.2e-16 90.9 178 42.1
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.2e-16 90.9 176 40.9
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.2e-16 90.9 205 39.5
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-16 90.5 175 41.7
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.5e-16 90.5 173 41.0
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 4.5e-16 89.0 175 41.1
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 5.9e-16 88.6 200 36.5
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 7.7e-16 88.2 176 40.3
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.7e-15 87.0 203 35.5
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.9e-15 86.3 202 40.6
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.0e-15 85.5 113 53.1
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.0e-15 85.5 113 53.1
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 5.0e-15 85.5 208 37.0
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 5.0e-15 85.5 208 37.0
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 5.0e-15 85.5 181 40.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 8.5e-15 84.7 230 35.7
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 8.5e-15 84.7 211 36.0
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.9e-14 83.6 115 48.7
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 2.5e-14 83.2 248 36.3
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 3.2e-14 82.8 161 42.9
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 3.2e-14 82.8 200 39.5
BcaB06g26463 Brassica carinata HOM05D005115 ORTHO05D005703 4.2e-14 82.4 74 64.9
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 7.2e-14 81.6 191 40.3
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 9.4e-14 81.3 113 49.6
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 9.4e-14 81.3 176 39.8
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 9.4e-14 81.3 224 35.3
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 2.1e-13 80.1 116 50.0
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 2.1e-13 80.1 187 40.1
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 2.1e-13 80.1 174 41.4
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 3.6e-13 79.3 201 37.3
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 3.6e-13 79.3 210 38.1
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-12 77.4 227 34.4
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.8e-12 77.0 176 39.2
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.3e-12 76.6 120 49.2
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 3.0e-12 76.3 188 39.9
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.0e-12 76.3 117 47.0
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 3.0e-12 76.3 178 38.2
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 3.9e-12 75.9 113 46.9
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 8.8e-12 74.7 120 45.0
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.1e-11 74.3 120 45.0
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 2.5e-11 73.2 129 42.6
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 3.3e-11 72.8 250 32.8
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.3e-11 72.4 120 43.3
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.3e-11 72.4 120 43.3
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 2.8e-10 69.7 205 36.1
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.7e-10 69.3 156 37.8
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 4.8e-10 68.9 181 37.0
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 4.8e-10 68.9 128 45.3
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 8.2e-10 68.2 102 48.0
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 5.3e-09 65.5 132 40.2
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.2e-08 64.3 125 43.2
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.5e-08 63.9 99 46.5
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 2.6e-08 63.2 169 34.9
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 3.4e-08 62.8 115 40.9
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 4.5e-08 62.4 113 43.4
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.0e-07 61.2 97 45.4
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.3e-07 60.8 181 34.3
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 2.2e-07 60.1 171 35.7
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 3.8e-07 59.3 117 41.0
BcaB01g01572 Brassica carinata HOM05D005115 ORTHO05D005703 7.2e-06 55.1 64 51.6


User provided reference genes

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