Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 5.0e-30 134.0 80 100.0
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 9.4e-29 129.8 80 98.8
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 8.2e-25 116.7 82 89.0
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 4.1e-24 114.4 80 76.2
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 4.1e-24 114.4 80 76.2
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 4.1e-24 114.4 80 76.2
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 4.1e-24 114.4 80 76.2
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 4.1e-24 114.4 80 76.2
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 2.0e-23 112.1 80 75.0
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.5e-21 105.1 80 72.5
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 6.7e-19 97.1 86 67.4
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 2.6e-18 95.1 77 76.6
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 2.6e-18 95.1 77 76.6
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 5.7e-18 94.0 77 68.8
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 2.2e-17 92.0 77 67.5
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 2.2e-17 92.0 77 67.5
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 2.2e-17 92.0 77 67.5
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 3.7e-17 91.3 85 62.4
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.1e-16 89.7 85 61.2
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 3.1e-16 88.2 85 61.2
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 5.3e-16 87.4 85 70.6
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 5.3e-16 87.4 85 70.6
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 5.3e-16 87.4 85 70.6
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 5.3e-16 87.4 85 70.6
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 9.1e-16 86.7 85 70.6
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 9.1e-16 86.7 85 68.2
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 9.1e-16 86.7 85 68.2
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.6e-15 85.9 85 58.8
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 4.5e-15 84.3 85 65.9
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 4.5e-15 84.3 82 70.7
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 4.5e-15 84.3 82 70.7
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 1.3e-14 82.8 86 69.8
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 1.3e-14 82.8 86 69.8
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.5e-13 78.6 60 66.7
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 9.4e-13 76.6 85 68.2
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 9.4e-13 76.6 85 68.2
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 9.4e-13 76.6 85 68.2
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 2.1e-12 75.5 88 59.1
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 6.1e-12 73.9 82 68.3
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 6.1e-12 73.9 82 68.3
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.3e-11 72.0 62 58.1
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.4e-10 67.8 61 54.1
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 5.7e-10 67.4 61 67.2
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 5.7e-10 67.4 82 64.6
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 5.7e-10 67.4 84 63.1
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.8e-09 65.1 58 53.4
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.5e-07 58.2 69 46.4
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 3.5e-07 58.2 37 70.3
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 3.5e-07 58.2 68 45.6
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.5e-07 57.8 37 67.6
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 4.5e-07 57.8 68 45.6
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 5.9e-07 57.4 79 41.8
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 5.9e-07 57.4 65 46.2
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 7.7e-07 57.0 56 50.0
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 7.7e-07 57.0 61 59.0
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.0e-06 56.6 48 54.2
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 69 46.4
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 43 60.5
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.2e-06 55.5 66 57.6
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.2e-06 55.5 66 57.6
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 2.2e-06 55.5 62 45.2
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.9e-06 55.1 67 47.8
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.9e-06 55.1 68 45.6
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.9e-06 55.1 68 45.6
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 2.9e-06 55.1 55 49.1
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 3.8e-06 54.7 65 47.7
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 3.8e-06 54.7 65 49.2
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 6.5e-06 53.9 58 50.0
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 6.5e-06 53.9 58 50.0
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 6.5e-06 53.9 71 46.5
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 6.5e-06 53.9 83 39.8
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 6.5e-06 53.9 65 47.7
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 8.5e-06 53.5 67 46.3


User provided reference genes

Program Settings