Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 6.8e-145 517.3 260 100.0
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.0e-129 466.8 259 89.2
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 8.6e-116 420.6 257 77.8
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.5e-115 419.9 257 77.4
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 7.3e-115 417.5 257 77.4
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 1.8e-113 412.9 256 79.3
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 5.2e-113 411.4 256 78.5
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 6.8e-113 411.0 257 76.7
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.5e-112 409.8 256 78.5
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 2.0e-112 409.5 256 78.1
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 7.6e-112 407.5 256 77.3
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 9.9e-112 407.1 256 78.1
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.9e-111 404.8 255 76.5
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 8.6e-108 394.0 255 74.1
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 4.0e-105 385.2 230 79.1
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.7e-103 379.8 231 77.1
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 4.2e-102 375.2 257 70.8
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 6.0e-93 344.7 256 64.1
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 5.6e-91 338.2 256 62.5
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.3e-90 337.0 256 62.5
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 6.2e-90 334.7 256 62.9
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.4e-89 333.6 255 62.0
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 1.8e-89 333.2 256 62.9
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 1.8e-89 333.2 256 61.7
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 2.4e-89 332.8 256 62.5
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.0e-88 329.7 256 60.5
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 2.0e-88 329.7 256 61.7
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 2.0e-88 329.7 256 61.7
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 2.0e-88 329.7 256 61.7
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.4e-88 328.9 256 61.3
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.3e-87 327.0 183 86.9
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.7e-87 326.6 256 62.1
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.2e-87 326.2 256 60.5
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.9e-86 323.2 168 94.0
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 3.2e-86 322.4 258 58.5
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 1.2e-85 320.5 254 58.3
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 2.1e-85 319.7 254 61.0
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 2.7e-85 319.3 257 59.5
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 3.5e-85 318.9 258 59.3
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 3.5e-85 318.9 257 59.1
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 4.6e-85 318.5 253 58.9
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.6e-85 318.5 258 58.5
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 6.0e-85 318.2 254 59.8
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 6.0e-85 318.2 257 60.7
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 7.9e-85 317.8 255 60.4
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 5.1e-84 315.1 261 56.7
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 8.7e-84 314.3 258 59.7
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.5e-83 313.5 253 60.1
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 1.9e-83 313.2 259 56.8
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.9e-83 313.2 258 57.8
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.9e-83 313.2 254 59.4
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 2.5e-83 312.8 255 59.6
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 2.5e-83 312.8 258 58.5
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 2.5e-83 312.8 253 59.3
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 5.6e-83 311.6 253 60.5
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.6e-83 311.6 255 59.2
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 7.4e-83 311.2 257 57.6
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.3e-82 310.5 258 58.1
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 1.3e-82 310.5 257 57.6
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.3e-82 310.5 259 57.5
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.1e-82 309.7 257 57.6
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.1e-82 309.7 257 57.6
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 2.1e-82 309.7 261 55.6
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.1e-81 307.4 252 56.3
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.1e-81 307.4 255 56.5
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.4e-81 307.0 256 56.2
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.4e-81 307.0 256 57.0
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.8e-81 306.6 265 57.0
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.8e-81 306.6 266 56.4
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.8e-81 306.6 252 56.7
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 2.4e-81 306.2 256 57.4
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 3.1e-81 305.8 253 58.1
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.2e-80 303.9 255 56.1
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.2e-80 303.9 255 56.1
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.5e-80 303.5 259 55.6
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.6e-80 302.8 263 57.4
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 2.6e-80 302.8 257 56.4
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 2.6e-80 302.8 256 55.5
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 4.5e-80 302.0 258 56.6
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 4.5e-80 302.0 256 55.5
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 5.8e-80 301.6 231 61.5
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 5.8e-80 301.6 259 54.8
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 5.8e-80 301.6 257 57.2
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 5.8e-80 301.6 256 56.2
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 7.6e-80 301.2 256 55.5
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 7.6e-80 301.2 260 56.2
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 1.3e-79 300.4 253 55.3
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.7e-79 300.1 256 55.1
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 3.8e-79 298.9 254 56.7
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 4.9e-79 298.5 254 56.3
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 7.1e-78 294.7 254 54.7
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.1e-77 293.1 257 54.1
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.7e-77 292.7 264 54.5
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 2.7e-77 292.7 254 55.9
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 7.9e-77 291.2 259 53.3
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.8e-76 290.0 259 53.3
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 2.3e-76 289.7 257 54.9
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 3.9e-76 288.9 234 56.8
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.3e-75 285.8 256 53.9
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 3.3e-75 285.8 262 54.2
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 3.7e-74 282.3 259 54.8
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.7e-74 282.3 258 52.7
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 2.0e-72 276.6 256 53.5
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 4.5e-72 275.4 260 53.5
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 6.5e-71 271.6 254 51.6
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 1.1e-70 270.8 265 51.3
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 4.2e-70 268.9 254 51.2
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 4.2e-70 268.9 262 50.8
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 7.2e-70 268.1 254 50.8
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 9.3e-70 267.7 161 78.3
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 1.6e-69 266.9 214 58.4
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 2.7e-69 266.2 255 51.4
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.7e-69 266.2 255 51.4
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 2.7e-69 266.2 254 50.8
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 3.6e-69 265.8 259 51.7
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.0e-68 264.2 254 49.6
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.9e-67 260.0 254 51.2
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 8.2e-66 254.6 231 54.1
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.4e-65 253.1 217 54.4
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.5e-64 248.8 255 48.6
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.5e-64 248.8 255 48.6
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 7.7e-64 248.1 218 53.2
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.7e-63 246.9 214 53.3
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 2.2e-63 246.5 255 46.3
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 5.5e-62 241.9 254 47.6
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 5.5e-62 241.9 254 47.6
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.1e-61 240.0 147 76.9
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 3.6e-61 239.2 216 51.4
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 3.6e-61 239.2 246 51.2
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 3.6e-61 239.2 256 50.0
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 8.8e-60 234.6 181 59.7
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 4.4e-59 232.3 173 63.0
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 9.7e-59 231.1 249 47.0
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.7e-58 230.3 233 49.4
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 1.4e-57 227.3 252 43.3
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 5.0e-55 218.8 253 45.8
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.1e-53 213.4 266 45.1
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 4.8e-50 202.2 256 43.8
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 6.3e-50 201.8 256 43.8
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.4e-49 200.7 163 57.7
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 6.7e-44 181.8 269 41.3
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 1.1e-41 174.5 223 44.4
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 5.3e-41 172.2 166 49.4
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.3e-39 167.5 399 32.1
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 5.0e-39 165.6 253 40.7
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.3e-34 151.0 109 69.7
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.7e-34 149.4 133 55.6
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 1.0e-31 141.4 236 36.0
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.6e-29 134.0 112 56.2
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 2.1e-29 133.7 223 39.0
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.7e-26 124.0 113 50.4
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.4e-25 120.9 219 35.2
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 7.8e-24 115.2 96 53.1
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 6.8e-20 102.1 115 45.2
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.5e-19 100.9 62 77.4
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.5e-19 100.9 180 35.6
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.3e-18 97.8 253 29.6
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 9.2e-17 91.7 214 28.0
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.7e-15 87.4 68 61.8
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 6.6e-15 85.5 178 33.7
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 3.6e-13 79.7 65 55.4
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 1.3e-10 71.2 86 43.0
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 7.0e-09 65.5 68 44.1
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.2e-08 64.7 43 72.1
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 2.1e-08 63.9 66 43.9
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 2.3e-07 60.5 58 53.4
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 5.0e-07 59.3 65 52.3
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.9e-06 57.4 47 53.2
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 3.3e-06 56.6 63 46.0


User provided reference genes

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