Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G28920 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 0.0e+00 1468.0 752 100.0
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 2.7e-295 1018.5 708 73.9
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 1.3e-220 770.4 714 61.1
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 9.0e-174 614.8 713 48.7
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 3.6e-162 576.2 728 45.5
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.8e-158 563.9 722 43.9
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.5e-157 560.8 719 44.2
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 2.9e-156 556.6 720 43.8
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 1.2e-154 551.2 723 43.0
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 2.1e-154 550.4 723 42.9
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 7.9e-154 548.5 722 42.9
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 1.4e-153 547.7 724 43.4
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 2.3e-153 547.0 718 43.3
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 2.0e-152 543.9 721 43.3
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 1.1e-150 538.1 720 42.9
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 8.8e-145 518.5 720 41.5
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 8.8e-145 518.5 720 41.5
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 4.4e-144 516.2 722 41.4
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 1.1e-139 501.5 718 41.2
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 1.9e-139 500.7 718 41.1
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 3.7e-111 406.8 733 34.9
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 2.0e-104 384.4 704 36.6
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 7.5e-104 382.5 733 34.8
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 3.5e-101 373.6 727 34.3
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 3.5e-101 373.6 739 34.4
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 2.1e-98 364.4 758 33.2
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 5.8e-96 356.3 736 33.6
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 7.5e-96 355.9 735 32.9
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 4.9e-95 353.2 738 33.3
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 1.2e-93 348.6 738 31.4
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 8.6e-92 342.4 726 31.4
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.5e-91 341.7 747 30.7
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 3.3e-91 340.5 723 32.5
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 7.3e-91 339.3 726 31.0
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 2.8e-90 337.4 721 32.2
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 5.8e-88 329.7 748 30.6
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.2e-85 322.0 736 31.1
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 4.6e-85 320.1 734 31.2
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 7.8e-85 319.3 752 30.7
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 1.3e-84 318.5 730 29.6
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 3.0e-84 317.4 730 31.1
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 7.3e-83 312.8 736 30.4
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 2.4e-81 307.8 692 30.8
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.1e-81 307.4 703 30.4
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.1e-81 307.4 703 30.4
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 2.0e-80 304.7 698 31.4
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 2.0e-80 304.7 718 31.5
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 2.0e-80 304.7 710 30.3
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 2.6e-80 304.3 675 31.3
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 9.9e-80 302.4 716 30.2
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 1.3e-79 302.0 676 31.7
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 3.8e-79 300.4 729 30.6
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 4.9e-79 300.1 717 30.4
AT5G28550 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 5.4e-78 296.6 190 77.9
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 1.2e-77 295.4 702 30.3
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 3.5e-77 293.9 710 30.4
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 1.3e-76 292.0 710 30.4
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.5e-75 288.5 706 30.2
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 1.9e-75 288.1 714 31.0
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 1.9e-75 288.1 724 29.8
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 2.5e-75 287.7 737 28.5
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 2.5e-75 287.7 701 30.1
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 2.1e-74 284.6 709 29.8
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 8.4e-71 272.7 697 29.0
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.4e-70 271.9 721 28.4
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 1.4e-70 271.9 694 30.3
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 3.2e-70 270.8 721 28.4
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 1.6e-69 268.5 707 29.7
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 2.1e-69 268.1 653 29.9
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 2.7e-69 267.7 711 29.3
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 1.0e-68 265.8 721 28.2
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.0e-68 265.8 709 29.2
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 1.3e-68 265.4 725 29.4
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.3e-68 265.4 712 27.5
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 3.9e-68 263.8 732 26.2
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 8.7e-68 262.7 724 29.4
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.5e-67 261.9 716 28.8
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 1.5e-67 261.9 532 33.3
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.3e-67 260.8 713 29.3
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 9.6e-67 259.2 709 28.9
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 9.6e-67 259.2 698 27.8
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 3.7e-66 257.3 732 26.5
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 4.8e-66 256.9 747 28.6
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 4.9e-63 246.9 725 27.2
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 9.6e-59 232.6 698 26.5
Gohir.A01G176550 Gossypium hirsutum HOM05D002759 ORTHO05D003290 5.3e-57 226.9 517 31.5
Gohir.D01G167366 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.2e-56 225.7 520 31.9
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 3.8e-55 220.7 709 25.7
AT4G24300 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.4e-54 218.8 132 84.1
CARHR230020 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.5e-54 218.0 302 43.4
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 2.3e-52 211.5 437 34.6
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 8.2e-50 203.0 464 31.2
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 3.4e-48 197.6 170 60.0
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 7.7e-48 196.4 709 26.1
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 7.7e-48 196.4 695 26.8
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 6.1e-45 186.8 169 57.4
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 1.0e-44 186.0 169 57.4
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 1.0e-44 186.0 169 57.4
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 3.3e-43 181.0 687 25.8
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 4.8e-42 177.2 740 25.4
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 1.4e-41 175.6 170 57.1
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 5.3e-41 173.7 727 23.1
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 2.0e-40 171.8 756 24.3
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 8.5e-39 166.4 728 24.6
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 9.4e-38 162.9 199 41.7
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 3.6e-37 161.0 399 32.3
Cpa.g.sc148.29 Carica papaya HOM05D002759 ORTHO05D003290 3.9e-36 157.5 314 32.5
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 2.2e-34 151.8 494 27.3
CARHR222370 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.8e-34 151.4 232 42.2
CARHR290780 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.8e-34 151.4 218 39.9
CARHR254470 Cardamine hirsuta HOM05D002759 ORTHO05D003290 3.6e-29 134.4 114 57.9
CsaV3_6G032170 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.2e-24 119.4 289 28.7
unitig_26.g9018 Utricularia gibba HOM05D002759 ORTHO05D003290 3.6e-21 107.8 716 21.8
MD00G1111200 Malus domestica HOM05D002759 ORTHO05D003290 4.7e-21 107.5 146 37.7
CARHR284400 Cardamine hirsuta HOM05D002759 ORTHO05D003290 6.1e-21 107.1 98 51.0
MD08G1225400 Malus domestica HOM05D002759 ORTHO05D003290 4.4e-19 100.9 155 34.8
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 9.8e-19 99.8 136 36.8
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 4.1e-17 94.4 209 32.1
arahy.Tifrunner.gnm1.ann1.HX0PY9 Arachis hypogaea HOM05D002759 ORTHO05D003290 2.7e-16 91.7 188 30.3
FAN18G4196 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.5e-16 91.3 406 24.1
MD08G1226100 Malus domestica HOM05D002759 ORTHO05D003290 2.5e-14 85.1 143 35.7
C04p02400 Brassica napus HOM05D002759 ORTHO05D000588 4.2e-14 84.3 68 61.8
Hund17372 Selenicereus undatus HOM05D002759 ORTHO05D003290 5.5e-14 84.0 258 29.1
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 3.6e-13 81.3 101 41.6
vmacro01778 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 6.1e-13 80.5 196 29.6
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.2e-11 76.3 116 31.9
SHI26605 Sapria himalayana HOM05D002759 ORTHO05D003290 3.4e-11 74.7 131 29.8
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 5.7e-11 73.9 150 31.3
SEGI_09272 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 1.3e-10 72.8 277 23.1
SEGI_36049 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 3.7e-10 71.2 208 23.6
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 2.0e-08 65.5 166 29.5
MD00G1111100 Malus domestica HOM05D002759 ORTHO05D003290 5.9e-08 63.9 78 39.7
FvH4_5g29931 Fragaria vesca HOM05D002759 ORTHO05D003290 7.7e-08 63.5 212 24.5


User provided reference genes

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