Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 7.1e-245 850.1 417 100.0
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 9.3e-229 796.6 419 93.6
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 3.9e-227 791.2 419 92.1
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 2.0e-223 778.9 421 89.5
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 8.7e-219 763.5 421 88.1
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 4.8e-217 757.7 421 88.1
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 4.8e-217 757.7 421 87.9
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 2.4e-216 755.4 406 89.9
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 4.0e-216 754.6 421 87.9
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 2.6e-215 751.9 421 87.4
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.4e-195 686.4 417 79.6
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.8e-184 649.4 333 95.5
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.4e-176 623.2 421 71.7
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 9.1e-176 620.5 420 70.7
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.7e-175 619.0 420 71.0
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.0e-174 617.1 425 70.1
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 5.0e-174 614.8 420 71.7
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 6.5e-174 614.4 418 69.9
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 7.2e-173 610.9 421 69.6
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 2.1e-172 609.4 425 69.6
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 6.1e-172 607.8 421 69.6
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 3.0e-171 605.5 414 70.8
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 3.4e-170 602.1 421 70.8
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.3e-169 600.1 420 68.3
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.7e-169 599.7 416 70.0
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 6.3e-169 597.8 414 68.8
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 3.1e-168 595.5 424 67.2
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 5.4e-168 594.7 415 68.4
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.6e-167 593.2 419 67.5
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 2.7e-167 592.4 415 68.9
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.1e-165 587.0 423 67.1
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 2.5e-165 585.9 424 66.0
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 5.5e-165 584.7 419 66.8
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 9.5e-165 583.9 418 67.5
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.6e-164 583.2 424 66.5
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 2.1e-164 582.8 424 66.0
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 6.1e-164 581.3 415 67.0
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 6.1e-164 581.3 420 66.7
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.4e-163 580.1 424 66.0
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.8e-163 579.7 415 66.3
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 3.0e-163 578.9 382 73.0
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 5.2e-163 578.2 423 66.4
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 4.4e-162 575.1 432 64.6
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 5.7e-162 574.7 418 65.6
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 7.5e-162 574.3 411 66.9
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 8.3e-161 570.9 418 65.6
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.4e-160 570.1 416 64.7
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.8e-160 569.7 407 65.1
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.8e-160 569.7 418 65.6
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 2.4e-160 569.3 417 66.7
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 5.4e-160 568.2 416 65.1
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 9.2e-160 567.4 416 65.6
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.2e-159 567.0 424 66.5
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 2.0e-159 566.2 429 64.8
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 2.0e-159 566.2 401 67.6
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 7.7e-159 564.3 421 65.3
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.9e-158 562.4 298 88.3
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 5.0e-158 561.6 415 64.6
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.5e-157 560.1 401 66.6
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.9e-157 559.7 440 63.6
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.2e-156 557.0 416 65.6
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 1.6e-156 556.6 408 66.9
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 2.3e-155 552.7 412 66.0
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 5.2e-155 551.6 445 61.8
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 5.2e-155 551.6 412 66.0
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 6.8e-155 551.2 416 64.2
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.2e-154 550.4 421 64.8
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.2e-154 550.4 415 63.9
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 3.4e-154 548.9 416 64.7
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.3e-153 547.0 429 62.9
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.9e-153 545.0 415 63.1
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 6.4e-153 544.7 415 63.4
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.8e-152 543.1 415 63.1
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.8e-152 543.1 431 62.2
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 9.2e-152 540.8 420 65.0
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 9.2e-152 540.8 391 67.0
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 9.2e-152 540.8 429 62.7
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 3.5e-151 538.9 471 58.6
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 5.9e-151 538.1 480 57.7
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 5.9e-151 538.1 414 62.3
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 5.9e-151 538.1 429 60.8
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 7.8e-151 537.7 448 60.7
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.3e-150 537.0 411 62.8
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.3e-150 536.2 393 66.7
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.9e-150 535.4 416 64.2
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 3.3e-149 532.3 415 60.7
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.2e-148 530.4 422 60.7
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.0e-148 527.7 455 58.2
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 1.7e-145 520.0 414 61.1
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 4.7e-140 501.9 433 60.0
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.1e-139 500.7 418 60.3
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.4e-139 500.4 331 71.3
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 2.3e-139 499.6 391 64.5
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 1.4e-136 490.3 412 60.2
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 8.1e-132 474.6 401 59.1
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 3.1e-131 472.6 309 74.4
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 9.9e-130 467.6 299 69.6
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.3e-129 467.2 423 55.3
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 5.4e-128 461.8 316 65.5
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 3.0e-126 456.1 304 67.1
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.4e-123 446.4 329 65.0
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-121 440.7 328 64.6
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 5.4e-120 435.3 413 55.7
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 4.8e-116 422.2 407 52.6
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.2e-114 417.5 422 50.7
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 3.4e-114 416.0 422 48.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.7e-113 413.7 423 49.9
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 2.4e-112 409.8 405 51.1
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.3e-104 381.3 310 61.3
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.1e-99 366.3 278 66.2
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.9e-97 359.8 316 54.1
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.5e-97 358.6 292 60.6
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.1e-83 314.7 278 60.1
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.2e-76 290.4 184 67.4
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 6.7e-70 268.9 449 36.1
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 1.0e-65 255.0 382 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 3.2e-64 250.0 228 50.0
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.4e-59 234.6 418 36.1
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.2e-53 214.9 560 29.6
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 4.5e-50 203.0 246 48.4
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 5.7e-45 186.0 192 49.0
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 4.1e-43 179.9 121 81.0
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.2e-39 168.3 135 60.7
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.0e-38 165.2 127 62.2
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 7.3e-32 142.5 116 57.8
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 4.7e-31 139.8 115 58.3
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 3.2e-27 127.1 256 33.2
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.5e-24 117.5 139 51.1
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 7.8e-18 95.9 105 43.8
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.6e-10 71.6 57 64.9
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 2.7e-10 70.9 113 44.2
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.9e-08 64.7 64 53.1
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 2.1e-07 61.2 38 68.4
BcaC09g52239 Brassica carinata HOM05D000538 ORTHO05D000614 3.1e-06 57.4 37 78.4


User provided reference genes

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