Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.0e-221 773.1 390 100.0
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 7.0e-178 627.5 395 83.8
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.4e-170 603.2 414 76.8
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 5.8e-132 474.9 463 59.0
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 9.6e-127 457.6 459 58.2
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.4e-125 453.0 463 56.6
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.2e-124 450.7 459 57.7
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 3.4e-124 449.1 465 55.7
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 5.8e-124 448.4 464 57.1
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 2.2e-123 446.4 448 57.1
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 2.2e-123 446.4 448 57.1
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 9.3e-122 441.0 472 54.2
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.2e-121 440.7 465 55.9
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.6e-121 440.3 445 56.6
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 6.0e-121 438.3 449 56.8
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 5.1e-120 435.3 450 55.6
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 5.4e-114 415.2 366 65.6
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.4e-98 364.0 318 62.6
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 7.9e-97 358.2 469 48.2
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 2.3e-96 356.7 469 48.2
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.5e-95 353.2 469 48.0
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 4.3e-95 352.4 459 46.2
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 2.8e-94 349.7 457 47.3
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.4e-93 346.7 470 46.6
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 9.0e-93 344.7 477 45.1
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.0e-92 343.6 472 46.6
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 2.2e-91 340.1 442 47.3
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 7.2e-90 335.1 465 45.6
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 3.0e-88 329.7 493 42.6
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 6.7e-88 328.6 454 43.8
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.3e-87 326.2 463 43.2
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 3.3e-87 326.2 447 45.4
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 9.7e-87 324.7 433 45.5
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.6e-86 323.9 432 45.6
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.6e-86 323.9 432 45.6
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 4.8e-86 322.4 463 43.8
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.1e-85 319.3 436 45.4
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 4.1e-85 319.3 485 41.0
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 5.3e-85 318.9 433 44.8
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 6.9e-85 318.5 470 44.5
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 9.0e-85 318.2 474 42.4
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 1.2e-84 317.8 476 41.8
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 2.0e-84 317.0 489 40.7
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 7.7e-84 315.1 480 42.9
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.0e-83 314.7 475 42.5
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.0e-83 314.7 489 40.9
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.3e-83 314.3 436 44.7
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.2e-83 313.5 482 42.5
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.9e-83 313.2 459 42.3
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 6.5e-83 312.0 501 40.3
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.1e-82 311.2 480 42.5
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.1e-82 311.2 470 43.0
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.4e-82 310.8 504 40.9
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.2e-82 309.7 480 41.5
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 3.2e-82 309.7 471 41.8
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 4.2e-82 309.3 470 41.3
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 9.4e-82 308.1 477 41.3
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.2e-81 307.8 496 39.9
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.2e-81 307.8 523 39.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.2e-81 307.8 469 40.5
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.6e-81 307.4 477 41.9
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 6.1e-81 305.4 410 44.4
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 1.0e-80 304.7 480 40.8
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 2.3e-80 303.5 463 41.9
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 3.0e-80 303.1 440 43.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 3.0e-80 303.1 470 40.6
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 5.1e-80 302.4 482 41.7
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 5.1e-80 302.4 456 40.8
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 6.7e-80 302.0 410 45.6
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.1e-79 301.2 526 39.4
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.5e-79 300.8 473 40.4
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 1.5e-79 300.8 434 44.9
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.5e-79 300.1 481 39.9
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.3e-78 297.7 460 42.0
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.3e-78 297.7 461 43.2
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.3e-78 297.7 459 41.8
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 3.7e-78 296.2 465 41.5
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 6.3e-78 295.4 500 39.8
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 6.3e-78 295.4 411 43.1
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 6.3e-78 295.4 397 44.3
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 8.2e-78 295.0 502 39.6
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.5e-76 290.8 467 38.8
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.5e-76 290.8 442 41.4
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 2.0e-76 290.4 467 39.0
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.6e-76 290.0 520 38.5
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.6e-76 290.0 520 38.5
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 3.4e-76 289.7 401 43.1
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 7.7e-76 288.5 516 37.8
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.7e-75 287.3 502 39.8
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.2e-75 287.0 409 44.5
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 2.2e-75 287.0 506 37.2
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 8.5e-75 285.0 389 44.0
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 8.5e-75 285.0 389 44.0
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 3.2e-74 283.1 470 40.2
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 4.2e-74 282.7 412 43.7
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.2e-73 281.2 378 43.7
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.6e-73 280.8 507 37.1
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 2.7e-73 280.0 410 42.2
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.6e-73 279.6 411 43.6
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.6e-73 279.6 412 42.5
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 6.1e-73 278.9 451 39.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 7.9e-73 278.5 389 42.4
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.0e-72 276.6 396 43.4
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 9.7e-71 271.6 458 39.7
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 3.5e-68 263.1 450 38.9
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.0e-67 261.5 334 45.5
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 3.2e-66 256.5 474 38.0
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.7e-65 253.4 382 42.7
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.7e-65 253.4 414 40.8
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 4.4e-63 246.1 353 43.9
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 8.2e-62 241.9 545 34.7
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 2.4e-61 240.4 433 37.4
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 4.5e-60 236.1 441 36.1
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.5e-58 231.1 420 41.0
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 4.7e-57 226.1 295 44.4
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 8.0e-57 225.3 404 37.4
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 4.4e-55 219.5 370 38.9
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 7.0e-53 212.2 345 42.3
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.2e-52 211.5 382 40.3
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.2e-50 203.4 332 39.8
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 6.1e-49 199.1 441 35.1
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.2e-41 174.9 379 34.6
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 5.2e-40 169.5 323 35.6
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 3.0e-35 153.7 157 47.1
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 2.0e-28 131.0 202 42.1
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 7.8e-28 129.0 211 41.2
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.0e-27 128.6 204 42.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.7e-27 127.9 219 39.7
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.8e-24 117.9 119 47.1
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 5.2e-24 116.3 347 26.8
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 9.8e-23 112.1 124 46.0
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 4.9e-22 109.8 196 37.8
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.4e-21 108.2 154 39.6
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 3.2e-21 107.1 204 35.8
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 1.6e-20 104.8 119 44.5
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.6e-20 104.8 182 39.0
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 1.2e-17 95.1 98 46.9
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.4e-16 91.7 183 32.8
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.2e-15 88.6 117 40.2
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.6e-15 87.4 183 31.1
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 9.9e-15 85.5 116 38.8
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 4.9e-14 83.2 74 50.0
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 8.4e-14 82.4 109 44.0
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 6.0e-12 76.3 185 33.5
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.0e-11 75.5 199 30.2
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.3e-11 74.3 203 32.0
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 3.9e-11 73.6 84 44.0
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.1e-10 72.0 87 42.5
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 7.3e-10 69.3 160 33.8
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 4.0e-08 63.5 171 25.1
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 8.9e-08 62.4 112 37.5
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 2.6e-07 60.8 147 29.3
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.6e-07 60.8 64 46.9
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 2.6e-07 60.8 107 41.1
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 9.9e-07 58.9 97 38.1
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 9.9e-07 58.9 164 28.0
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 2.2e-06 57.8 110 32.7
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 2.2e-06 57.8 134 31.3
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.9e-06 57.4 67 38.8
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 2.9e-06 57.4 131 28.2
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 2.9e-06 57.4 131 27.5
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 3.8e-06 57.0 134 31.3
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 6.4e-06 56.2 188 28.7
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 8.4e-06 55.8 102 41.2


User provided reference genes

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