Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 5.6e-135 484.2 230 100.0
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 1.2e-121 439.9 230 90.4
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 2.4e-101 372.5 222 80.2
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 6.7e-88 327.8 216 73.1
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 6.5e-83 311.2 219 68.0
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 8.5e-83 310.8 219 68.0
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 3.2e-82 308.9 217 68.2
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 2.1e-81 306.2 216 70.4
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 6.1e-81 304.7 219 67.1
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 1.8e-80 303.1 219 65.8
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 2.5e-42 176.4 171 49.7
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 2.4e-29 133.3 172 41.3
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 3.2e-29 132.9 165 41.8
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 1.6e-28 130.6 214 37.4
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 2.7e-28 129.8 174 37.4
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 1.7e-27 127.1 161 41.0
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 1.7e-27 127.1 181 38.7
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 3.9e-27 125.9 160 41.2
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 5.1e-27 125.6 166 39.8
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 5.1e-27 125.6 167 38.9
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.1e-27 125.6 167 38.9
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 6.6e-27 125.2 204 35.8
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.7e-27 124.8 208 37.0
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.7e-27 124.8 208 37.0
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.1e-26 124.4 175 38.3
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 1.5e-26 124.0 162 39.5
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.5e-26 124.0 160 40.6
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.9e-26 123.6 164 40.2
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 1.9e-26 123.6 167 43.1
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 3.3e-26 122.9 165 40.0
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 4.3e-26 122.5 167 40.7
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 5.6e-26 122.1 164 39.6
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 1.3e-25 120.9 164 39.0
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 1.3e-25 120.9 172 38.4
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 1.3e-25 120.9 205 33.7
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 1.6e-25 120.6 163 38.0
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 2.8e-25 119.8 162 39.5
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 3.6e-25 119.4 176 36.9
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 4.8e-25 119.0 188 36.2
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 6.2e-25 118.6 181 37.0
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 6.2e-25 118.6 163 38.0
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 8.1e-25 118.2 167 38.9
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 1.8e-24 117.1 190 35.8
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 1.8e-24 117.1 162 36.4
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 2.4e-24 116.7 164 36.0
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 3.1e-24 116.3 163 39.3
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 3.1e-24 116.3 161 37.3
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 4.0e-24 115.9 217 33.6
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 4.0e-24 115.9 168 33.9
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 5.3e-24 115.5 185 35.7
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 5.3e-24 115.5 174 36.8
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 5.3e-24 115.5 193 35.8
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 6.9e-24 115.2 168 33.9
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 9.0e-24 114.8 181 35.9
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 9.0e-24 114.8 181 35.9
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 9.0e-24 114.8 168 36.3
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 1.5e-23 114.0 161 37.3
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 2.0e-23 113.6 164 39.0
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 2.0e-23 113.6 168 36.9
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.6e-23 113.2 168 33.9
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 3.4e-23 112.8 188 33.0
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.4e-23 112.5 163 40.5
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 4.4e-23 112.5 181 34.8
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 5.8e-23 112.1 170 35.9
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 5.8e-23 112.1 186 33.3
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 7.6e-23 111.7 181 34.8
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 7.6e-23 111.7 171 36.3
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 9.9e-23 111.3 173 36.4
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 9.9e-23 111.3 177 35.6
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.3e-22 110.9 169 35.5
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 2.2e-22 110.2 184 33.7
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 2.9e-22 109.8 167 35.3
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 3.8e-22 109.4 154 38.3
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 6.4e-22 108.6 177 34.5
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 6.4e-22 108.6 185 33.0
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 1.1e-21 107.8 173 37.0
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 1.1e-21 107.8 186 31.7
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.4e-21 107.5 174 36.2
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 1.9e-21 107.1 175 34.9
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 1.9e-21 107.1 169 36.7
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 1.9e-21 107.1 169 36.7
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 1.9e-21 107.1 186 31.7
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.4e-21 106.7 165 37.6
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 2.4e-21 106.7 177 36.7
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 2.4e-21 106.7 168 35.7
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 5.4e-21 105.5 168 35.7
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.6e-20 104.0 174 35.6
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 1.6e-20 104.0 163 34.4
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 2.1e-20 103.6 166 34.9
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 4.6e-20 102.4 179 31.3
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 7.8e-20 101.7 169 33.7
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-19 100.9 174 35.1
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 1.7e-19 100.5 166 33.7
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 3.0e-19 99.8 163 31.9
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 5.1e-19 99.0 168 33.9
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 5.1e-19 99.0 169 34.9
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 6.6e-19 98.6 165 33.3
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 6.6e-19 98.6 173 34.7
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 6.6e-19 98.6 166 32.5
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 1.1e-18 97.8 157 38.9
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 1.1e-18 97.8 140 37.9
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 1.9e-18 97.1 168 33.9
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 1.9e-18 97.1 168 33.9
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 4.3e-18 95.9 169 34.3
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.3e-17 94.4 170 30.0
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 1.6e-17 94.0 167 33.5
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 2.1e-17 93.6 169 33.7
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 2.1e-17 93.6 167 31.7
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 2.8e-17 93.2 174 30.5
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.8e-17 93.2 174 31.6
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 2.8e-17 93.2 176 34.1
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 3.6e-17 92.8 184 29.9
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 8.1e-17 91.7 171 35.1
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 1.4e-16 90.9 171 28.7
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 1.4e-16 90.9 169 32.5
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.4e-16 90.9 169 32.5
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 2.4e-16 90.1 99 48.5
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 4.0e-16 89.4 167 31.7
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 4.0e-16 89.4 144 34.0
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 5.3e-16 89.0 166 36.7
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 6.9e-16 88.6 143 32.9
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 9.0e-16 88.2 144 34.0
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.2e-15 87.8 164 33.5
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 2.0e-15 87.0 158 38.0
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 2.0e-15 87.0 179 31.8
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 2.0e-15 87.0 167 34.1
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.4e-15 86.3 174 30.5
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 5.8e-15 85.5 171 32.7
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.8e-15 85.5 170 30.0
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 9.9e-15 84.7 99 44.4
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.3e-14 84.3 187 28.9
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 2.2e-14 83.6 174 32.2
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 2.9e-14 83.2 169 29.6
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 6.4e-14 82.0 126 39.7
Mapoly0021s0099 Marchantia polymorpha HOM05D003575 ORTHO05D003587 1.1e-13 81.3 155 34.8
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.4e-13 80.9 124 37.1
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 2.4e-13 80.1 167 33.5
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 3.2e-13 79.7 191 25.7
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 9.3e-13 78.2 96 41.7
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.1e-12 77.0 205 24.9
Pp3c24_6860 Physcomitrium patens HOM05D003575 ORTHO05D003587 4.6e-12 75.9 175 28.6
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 7.9e-12 75.1 98 37.8
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 1.0e-11 74.7 105 37.1
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 1.8e-11 73.9 98 39.8
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 2.3e-11 73.6 192 28.1
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 3.0e-11 73.2 172 30.8
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 8.7e-11 71.6 124 35.5
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 3.3e-10 69.7 98 38.8
Mapoly0072s0063 Marchantia polymorpha HOM05D040683 ORTHO05D003587 7.4e-10 68.6 141 31.2
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 1.3e-09 67.8 98 39.8
Zm00001eb264990 Zea mays HOM05D003575 ORTHO05D003587 1.6e-09 67.4 138 25.4
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.8e-09 66.6 97 36.1
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.1e-08 64.7 103 35.0
EL10Ac6g15056 Beta vulgaris HOM05D003575 ORTHO05D003587 1.3e-06 57.8 70 40.0
EL10Ac9g22882 Beta vulgaris HOM05D003575 ORTHO05D003587 8.4e-06 55.1 70 38.6


User provided reference genes

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