Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 3.4e-301 1037.7 589 100.0
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 9.6e-272 939.9 589 91.3
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 3.4e-253 878.2 593 86.8
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 4.5e-253 877.9 593 86.7
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.3e-247 859.8 593 84.5
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 1.1e-240 836.6 592 83.4
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 3.4e-237 825.1 593 77.1
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 2.0e-232 809.3 593 79.4
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 2.4e-230 802.4 595 81.3
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 2.0e-229 799.3 593 78.8
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 3.4e-229 798.5 596 78.4
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 7.7e-229 797.3 595 80.7
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 7.7e-229 797.3 591 76.3
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 1.3e-228 796.6 596 78.0
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 6.1e-218 761.1 591 77.8
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.8e-177 626.7 590 68.1
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 8.1e-170 601.3 614 65.0
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.6e-165 587.0 610 63.9
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 1.5e-120 437.6 698 42.8
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 5.3e-113 412.5 704 47.9
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 7.0e-113 412.1 679 43.7
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 7.0e-113 412.1 691 44.4
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.2e-110 402.9 692 42.5
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 1.2e-109 401.4 661 42.2
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.6e-109 401.0 674 42.6
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.6e-109 401.0 674 43.0
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.4e-108 397.9 664 41.1
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.8e-108 397.5 657 41.7
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 3.9e-108 396.4 677 40.5
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 5.2e-108 396.0 682 42.4
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.3e-107 393.3 654 41.1
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 2.2e-106 390.6 655 40.8
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 1.4e-105 387.9 691 39.9
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.8e-105 387.5 687 40.8
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 7.7e-104 382.1 693 39.5
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 7.7e-104 382.1 683 40.1
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 2.2e-103 380.6 669 42.9
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 2.9e-103 380.2 674 40.1
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 8.5e-103 378.6 693 41.1
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 1.5e-102 377.9 673 38.6
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.9e-102 377.5 703 39.1
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 4.2e-102 376.3 657 39.9
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 5.5e-102 375.9 657 39.4
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 7.2e-102 375.6 689 40.2
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 1.2e-101 374.8 666 39.3
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 4.7e-101 372.9 614 42.3
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 6.1e-101 372.5 678 39.7
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 1.4e-100 371.3 668 38.5
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 3.0e-100 370.2 625 42.1
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 6.7e-100 369.0 686 39.2
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 1.5e-99 367.9 670 40.1
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 4.4e-99 366.3 689 39.9
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 5.7e-99 365.9 697 40.5
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 1.3e-98 364.8 672 39.6
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.3e-98 364.8 696 40.5
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 8.3e-98 362.1 692 38.3
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 4.1e-97 359.8 682 39.4
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 9.1e-97 358.6 691 38.9
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 9.1e-97 358.6 666 40.5
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 9.1e-97 358.6 692 37.3
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 1.2e-96 358.2 679 42.4
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 1.7e-95 354.4 659 38.2
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 3.8e-95 353.2 682 39.3
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 1.1e-94 351.7 675 39.4
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 1.1e-94 351.7 680 38.2
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 1.9e-94 350.9 668 40.4
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 4.2e-94 349.7 685 38.5
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 5.5e-94 349.4 684 39.2
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 2.7e-93 347.1 679 38.0
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 3.6e-93 346.7 680 39.7
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 6.1e-93 345.9 675 38.8
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 8.8e-92 342.0 681 37.7
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 1.2e-91 341.7 668 36.5
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 2.0e-91 340.9 681 37.0
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 4.4e-91 339.7 676 40.1
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 9.8e-91 338.6 612 40.2
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 4.8e-90 336.3 661 39.9
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 7.0e-89 332.4 765 34.2
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 1.2e-88 331.6 629 37.4
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.6e-88 331.3 685 38.5
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.0e-88 330.9 627 40.8
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.7e-88 330.5 676 38.3
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 7.7e-88 328.9 677 43.6
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 1.3e-87 328.2 595 43.9
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 1.7e-87 327.8 661 39.5
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 2.9e-87 327.0 674 38.0
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 1.9e-86 324.3 681 36.0
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 2.5e-86 323.9 668 38.8
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 4.2e-86 323.2 588 39.3
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.6e-85 321.2 669 39.2
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 2.1e-85 320.9 671 38.7
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 8.0e-85 318.9 688 35.5
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.0e-84 318.5 666 35.9
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 1.8e-84 317.8 797 33.9
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 2.3e-84 317.4 747 34.5
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.3e-84 317.4 672 38.4
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 5.2e-84 316.2 758 36.8
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.8e-84 315.8 669 38.3
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 6.8e-84 315.8 673 40.0
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 8.9e-84 315.5 686 34.8
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 8.9e-84 315.5 683 36.3
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 4.4e-83 313.2 671 36.2
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 9.8e-83 312.0 688 36.5
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 6.3e-82 309.3 663 35.4
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.6e-80 304.7 668 35.0
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 5.9e-80 302.8 739 34.4
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.0e-79 302.0 654 39.3
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 2.9e-79 300.4 717 35.3
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 3.9e-79 300.1 702 36.5
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 5.0e-79 299.7 678 35.1
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 8.6e-79 298.9 522 42.5
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 2.5e-78 297.4 637 34.7
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 9.5e-78 295.4 678 35.0
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.2e-77 295.0 517 42.9
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 3.1e-76 290.4 680 34.7
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 4.0e-76 290.0 680 34.6
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 5.2e-76 289.7 672 36.2
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.0e-75 287.7 688 34.3
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 7.5e-75 285.8 746 33.4
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 3.7e-74 283.5 669 37.5
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.9e-73 281.2 247 58.3
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 1.9e-73 281.2 633 37.1
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 2.4e-73 280.8 657 35.2
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 4.1e-73 280.0 247 55.1
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 4.6e-72 276.6 587 35.6
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 1.0e-71 275.4 638 35.4
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 1.7e-71 274.6 328 46.3
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 1.5e-70 271.6 542 35.8
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.5e-70 271.6 198 67.7
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.9e-70 271.2 603 39.1
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.5e-70 270.8 547 36.7
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.6e-69 268.1 640 37.8
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 1.6e-69 268.1 698 36.1
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 3.1e-68 263.8 741 32.4
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 3.7e-66 256.9 647 32.6
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 6.0e-64 249.6 529 35.2
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 5.1e-63 246.5 244 50.8
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 5.1e-63 246.5 336 41.7
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 1.9e-62 244.6 256 47.3
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.6e-61 241.5 203 60.1
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.3e-60 237.7 626 30.7
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.0e-59 234.6 189 61.4
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 1.7e-55 221.5 220 52.3
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 6.6e-55 219.5 247 49.4
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 6.6e-55 219.5 245 46.9
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 1.9e-54 218.0 585 31.6
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 2.5e-54 217.6 541 33.3
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 1.2e-53 215.3 237 48.5
BraA01t01640Z Brassica rapa HOM05D002456 ORTHO05D002994 1.1e-49 202.2 141 76.6
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 3.2e-49 200.7 204 49.5
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 3.9e-47 193.7 200 47.5
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 4.3e-46 190.3 657 29.4
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.4e-43 180.6 671 28.6
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 3.3e-38 164.1 136 62.5
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 3.3e-38 164.1 206 46.1
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 2.0e-35 154.8 126 59.5
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 1.4e-28 132.1 200 42.0
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.1e-28 131.0 158 48.7
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 6.9e-28 129.8 113 58.4
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 4.2e-25 120.6 375 29.3
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 2.5e-22 111.3 82 65.9
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 2.1e-21 108.2 206 33.0
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.1e-17 95.9 344 30.2
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 1.3e-13 82.4 470 24.3
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 1.4e-12 79.0 64 60.9
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 3.4e-11 74.3 96 42.7
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.7e-08 64.7 61 50.8
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.0e-07 62.8 340 26.8
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 3.9e-07 60.8 375 26.4
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 2.5e-06 58.2 140 31.4
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 9.7e-06 56.2 301 25.6


User provided reference genes

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