Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 3.5e-177 624.8 304 100.0
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 8.4e-155 550.4 306 88.6
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 7.4e-151 537.3 302 87.1
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.4e-149 533.1 304 84.5
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 3.1e-149 531.9 304 84.2
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 2.0e-143 512.7 297 83.8
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 3.3e-143 511.9 301 82.1
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.7e-142 509.6 275 90.5
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 5.3e-141 504.6 297 82.8
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 2.5e-138 495.7 297 81.5
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.6e-137 493.0 299 78.9
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 8.0e-105 384.4 297 62.0
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 4.4e-103 378.6 298 61.1
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 5.7e-103 378.3 294 61.6
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 5.7e-103 378.3 299 62.5
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 7.5e-103 377.9 263 66.9
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.7e-102 376.7 292 63.7
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 2.8e-102 375.9 300 59.0
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.8e-102 375.9 296 61.1
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 4.9e-102 375.2 268 67.2
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 6.3e-102 374.8 263 66.5
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 8.3e-102 374.4 279 65.9
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.1e-101 374.0 287 63.4
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.4e-101 373.6 250 68.0
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.4e-101 373.6 250 68.0
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.4e-101 373.6 283 62.9
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.4e-101 373.6 303 60.1
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.8e-101 373.2 296 62.5
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.8e-101 373.2 288 62.5
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 3.2e-101 372.5 300 60.0
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.2e-100 370.5 288 62.2
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.5e-100 368.6 288 62.5
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 7.8e-100 367.9 290 62.4
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.0e-99 367.5 238 69.7
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.7e-99 366.7 249 69.5
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.7e-99 366.7 256 66.0
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.6e-99 364.8 288 62.2
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.6e-99 364.8 288 62.2
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 8.6e-99 364.4 248 69.0
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 8.6e-99 364.4 286 62.9
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.1e-98 364.0 284 61.6
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.9e-98 363.2 286 62.9
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 1.9e-98 363.2 277 63.2
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 4.3e-98 362.1 305 59.7
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 5.6e-98 361.7 296 61.8
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 9.5e-98 360.9 302 59.3
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-97 360.5 302 58.9
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 2.1e-97 359.8 319 57.4
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.1e-97 359.8 281 63.0
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 2.8e-97 359.4 262 64.9
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.4e-96 357.1 271 64.2
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 3.1e-96 355.9 317 56.8
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 4.0e-96 355.5 275 63.6
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 5.2e-96 355.1 246 67.1
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 6.8e-96 354.8 300 60.3
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.0e-95 353.2 281 59.8
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 4.4e-95 352.1 299 57.5
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 4.4e-95 352.1 266 60.5
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 4.4e-95 352.1 285 60.7
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 5.8e-95 351.7 247 65.6
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 7.5e-95 351.3 303 59.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 9.8e-95 350.9 300 58.0
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.2e-94 349.7 269 62.5
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 3.7e-94 349.0 292 57.2
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 6.4e-94 348.2 234 67.9
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 8.3e-94 347.8 276 60.1
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 8.3e-94 347.8 350 52.3
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 8.3e-94 347.8 264 60.6
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.1e-93 347.4 301 57.1
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.1e-93 347.4 235 67.2
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.9e-93 346.7 246 68.3
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 1.9e-93 346.7 298 56.4
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 2.4e-93 346.3 249 65.9
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 4.1e-93 345.5 300 58.0
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 9.2e-93 344.4 355 51.0
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.6e-92 343.6 235 66.8
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.0e-92 343.2 235 66.4
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 2.0e-92 343.2 267 61.0
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 3.5e-92 342.4 230 71.3
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 1.0e-91 340.9 235 65.5
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.3e-91 340.5 284 57.7
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.3e-91 339.7 299 56.5
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 3.9e-91 339.0 235 65.5
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 5.0e-91 338.6 249 65.1
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.5e-90 337.0 235 65.1
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 2.5e-90 336.3 244 65.2
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 3.3e-90 335.9 237 65.8
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 4.3e-90 335.5 329 54.7
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 4.7e-89 332.0 244 63.5
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.8e-88 330.1 284 57.0
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.1e-88 329.3 247 63.2
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 4.0e-88 328.9 248 62.9
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 4.0e-88 328.9 249 61.0
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 4.0e-88 328.9 294 56.5
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.5e-87 327.0 248 64.9
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.4e-87 325.5 249 64.3
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.7e-86 323.6 235 64.7
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 2.9e-86 322.8 277 59.6
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 2.9e-86 322.8 277 59.6
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 6.4e-86 321.6 300 54.3
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.9e-85 320.1 297 56.9
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 5.4e-85 318.5 325 53.2
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.2e-84 317.4 225 67.6
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.6e-84 317.0 262 59.5
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.1e-84 316.6 283 53.7
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.7e-84 316.2 260 58.8
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 6.0e-84 315.1 245 62.0
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 8.6e-83 311.2 302 54.3
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.9e-82 310.1 302 54.3
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 5.6e-82 308.5 199 72.4
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.6e-82 308.5 347 49.3
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 4.7e-81 305.4 298 53.4
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 1.8e-80 303.5 259 56.8
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 3.2e-77 292.7 354 44.9
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 7.1e-77 291.6 264 54.5
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 3.1e-72 276.2 218 59.6
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.8e-72 275.0 234 56.4
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.2e-71 274.2 230 55.7
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.2e-70 270.0 233 55.8
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 4.2e-69 265.8 299 49.8
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.9e-66 256.9 180 68.9
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 3.6e-65 252.7 253 48.6
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 3.6e-65 252.7 253 48.6
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.0e-64 249.2 209 57.4
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 9.0e-64 248.1 234 50.9
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 5.4e-61 238.8 169 65.7
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 8.7e-59 231.5 213 56.3
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.5e-58 229.9 210 56.2
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 3.6e-57 226.1 193 60.1
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 2.0e-55 220.3 152 69.7
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.3e-54 217.6 235 43.0
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 6.0e-52 208.8 192 53.6
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 6.7e-51 205.3 161 61.5
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.3e-50 202.6 137 65.7
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.2e-47 194.5 255 38.4
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.4e-47 193.0 210 48.1
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 3.2e-45 186.4 288 39.6
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 1.6e-44 184.1 158 58.2
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 3.3e-42 176.4 116 69.0
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 2.4e-40 170.2 171 51.5
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.1e-35 152.5 108 64.8
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.1e-32 142.9 144 54.9
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 3.6e-28 129.8 187 41.7
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 3.6e-28 129.8 144 48.6
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 3.0e-27 126.7 136 51.5
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 2.9e-22 110.2 141 48.9
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.7e-20 103.6 136 43.4
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.1e-20 102.4 73 64.4
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 3.9e-19 99.8 106 46.2
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 9.7e-18 95.1 72 58.3
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.7e-17 93.2 77 57.1
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 2.4e-16 90.5 70 55.7
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 9.1e-16 88.6 75 62.7
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 1.4e-11 74.7 38 86.8
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 7.5e-10 68.9 51 64.7
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 9.7e-10 68.6 45 64.4
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 2.0e-07 60.8 182 29.1
SHI13753 Sapria himalayana HOM05D004727 ORTHO05D367616 8.5e-06 55.5 36 66.7


User provided reference genes

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