Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G26960 Arabidopsis lyrata HOM05D007474 ORTHO05D009367 8.2e-124 447.2 248 100.0
AT4G26020 Arabidopsis thaliana HOM05D007474 ORTHO05D009367 1.4e-115 419.9 248 95.6
Carub.0007s1493 Capsella rubella HOM05D007474 ORTHO05D009367 2.5e-112 409.1 248 92.3
Thhalv10027087m.g Eutrema salsugineum HOM05D007474 ORTHO05D009367 7.7e-106 387.5 248 87.1
CARHR233540 Cardamine hirsuta HOM05D007474 ORTHO05D009367 1.7e-105 386.3 248 89.1
Sp7g24050 Schrenkiella parvula HOM05D007474 ORTHO05D009367 7.2e-104 380.9 248 86.3
A03p56400 Brassica napus HOM05D007474 ORTHO05D009367 5.2e-102 374.8 248 84.3
C07p54630 Brassica napus HOM05D007474 ORTHO05D009367 2.0e-101 372.9 248 83.5
BolC7t45951H Brassica oleracea HOM05D007474 ORTHO05D009367 4.5e-98 361.7 266 77.8
THA.LOC104813505 Tarenaya hassleriana HOM05D007474 ORTHO05D009367 9.5e-88 327.4 247 73.3
BcaC06g32774 Brassica carinata HOM05D007474 ORTHO05D009367 1.8e-86 323.2 248 74.2
Aa31LG3G380 Aethionema arabicum HOM05D007474 ORTHO05D009367 2.3e-86 322.8 247 76.5
BraA03t14710Z Brassica rapa HOM05D007474 ORTHO05D009367 5.4e-83 311.6 267 69.7
Haze_22034 Corylus avellana HOM05D007474 ORTHO05D009367 1.2e-69 267.3 243 63.0
Haze_22037 Corylus avellana HOM05D007474 ORTHO05D009367 1.2e-69 267.3 243 63.0
Ciclev10010167m.g Citrus clementina HOM05D007474 ORTHO05D009367 8.3e-68 261.2 247 59.1
Atru.chr7.945_Atru.chr7.946 Acer truncatum HOM05D007474 ORTHO05D009367 1.6e-66 256.9 247 59.5
GSVIVG01029310001 Vitis vinifera HOM05D007474 ORTHO05D009367 3.5e-66 255.8 244 59.0
Manes.02G078300 Manihot esculenta HOM05D007474 ORTHO05D009367 4.6e-66 255.4 247 57.9
Dinv41187 Davidia involucrata HOM05D007474 ORTHO05D009367 1.0e-65 254.2 243 57.6
RcHm_v2.0_Chr4g0399191 Rosa chinensis HOM05D007474 ORTHO05D009367 1.3e-65 253.8 244 59.4
CiPaw.07G198000 Carya illinoinensis HOM05D007474 ORTHO05D009367 1.9e-64 250.0 247 59.1
Cfa013460 Carpinus fangiana HOM05D007474 ORTHO05D009367 3.3e-64 249.2 243 60.1
Prupe.1G073900 Prunus persica HOM05D007474 ORTHO05D009367 3.3e-64 249.2 247 58.3
FvH4_4g07070 Fragaria vesca HOM05D007474 ORTHO05D009367 1.2e-63 247.3 246 57.3
Nn8g40674 Nelumbo nucifera HOM05D007474 ORTHO05D009367 1.2e-63 247.3 244 57.4
Thecc.09G187600 Theobroma cacao HOM05D007474 ORTHO05D009367 1.1e-62 244.2 246 58.1
FAN17G0817 Fragaria x ananassa HOM05D007474 ORTHO05D009367 1.4e-62 243.8 246 56.5
Rhsim01G0114800 Rhododendron simsii HOM05D007474 ORTHO05D009367 3.1e-62 242.7 246 55.7
TAR625G0702 Trochodendron aralioides HOM05D007474 ORTHO05D009367 4.0e-62 242.3 244 56.1
Rhsim01G0114300 Rhododendron simsii HOM05D007474 ORTHO05D009367 5.8e-61 238.4 246 55.3
Actinidia02497 Actinidia chinensis HOM05D007474 ORTHO05D009367 2.2e-60 236.5 244 53.7
FAN07G0784 Fragaria x ananassa HOM05D007474 ORTHO05D009367 3.2e-59 232.6 253 55.3
Duzib170G0522 Durio zibethinus HOM05D007474 ORTHO05D009367 2.7e-58 229.6 246 56.1
Gohir.A02G011900 Gossypium hirsutum HOM05D007474 ORTHO05D009367 2.7e-58 229.6 251 56.6
HanXRQChr03g0065461 Helianthus annuus HOM05D007474 ORTHO05D009367 2.7e-58 229.6 247 53.0
FAN22G0500 Fragaria x ananassa HOM05D007474 ORTHO05D009367 3.5e-58 229.2 248 55.2
Cc06_g17460 Coffea canephora HOM05D007474 ORTHO05D009367 6.0e-58 228.4 240 52.9
TPR.G7578 Trifolium pratense HOM05D007474 ORTHO05D009367 1.0e-57 227.6 245 53.5
FAN12G4033 Fragaria x ananassa HOM05D007474 ORTHO05D009367 2.3e-57 226.5 251 54.2
Lsat_1_v5_gn_7_55841 Lactuca sativa HOM05D007474 ORTHO05D009367 6.6e-57 224.9 248 54.0
Lj6g0008723 Lotus japonicus HOM05D007474 ORTHO05D009367 3.3e-56 222.6 247 51.8
Phvul.009G235500 Phaseolus vulgaris HOM05D007474 ORTHO05D009367 7.3e-56 221.5 247 51.4
Cpa.g.sc95.3 Carica papaya HOM05D007474 ORTHO05D009367 2.1e-55 219.9 247 55.1
Medtr2g038090 Medicago truncatula HOM05D007474 ORTHO05D009367 3.6e-55 219.2 245 53.1
PSO063G0774 Papaver somniferum HOM05D007474 ORTHO05D009367 1.4e-54 217.2 245 51.8
Psat1g143800 Pisum sativum HOM05D007474 ORTHO05D009367 2.4e-54 216.5 245 52.2
Glyma.09G060400 Glycine max HOM05D007474 ORTHO05D009367 4.0e-54 215.7 247 50.2
Peaxi162Scf00231g01013 Petunia axillaris HOM05D007474 ORTHO05D009367 6.9e-54 214.9 244 50.0
TWI63G0256 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 1.2e-53 214.2 247 51.8
ECA240G4744 Erigeron canadensis HOM05D007474 ORTHO05D009367 1.5e-53 213.8 241 50.2
VMungo1309G2929 Vigna mungo HOM05D007474 ORTHO05D009367 4.4e-53 212.2 247 50.2
Gohir.D02G012700 Gossypium hirsutum HOM05D007474 ORTHO05D009367 5.8e-53 211.8 246 53.7
Aqoxy7G02873 Aquilegia oxysepala HOM05D007474 ORTHO05D009367 1.3e-52 210.7 270 47.4
CANSAT56G2223 Cannabis sativa HOM05D007474 ORTHO05D009367 1.3e-52 210.7 244 51.6
Nitab4.5_0011174g0010 Nicotiana tabacum HOM05D007474 ORTHO05D009367 1.9e-51 206.8 244 48.8
Lalb_Chr23g0276761 Lupinus albus HOM05D007474 ORTHO05D009367 2.4e-51 206.5 247 49.0
QL04p010614 Quercus lobata HOM05D007474 ORTHO05D009367 3.2e-51 206.1 246 50.0
Gorai.005G016200 Gossypium raimondii HOM05D007474 ORTHO05D009367 4.2e-51 205.7 251 52.2
CAN.G107.39 Capsicum annuum HOM05D007474 ORTHO05D009367 7.1e-51 204.9 240 46.7
MD16G1247400 Malus domestica HOM05D007474 ORTHO05D009367 1.6e-50 203.8 227 50.7
PSO170G3200 Papaver somniferum HOM05D007474 ORTHO05D009367 2.3e-49 199.9 295 43.7
Sabra18G0115300 Salix brachista HOM05D007474 ORTHO05D009367 6.6e-49 198.4 189 59.3
Hma1.2p1_0235F.1_g098730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 1.1e-48 197.6 214 51.4
arahy.Tifrunner.gnm1.ann1.0S7KVV Arachis hypogaea HOM05D007474 ORTHO05D009367 3.1e-46 189.5 228 48.2
PGR142G1289 Punica granatum HOM05D007474 ORTHO05D009367 1.5e-45 187.2 265 45.7
arahy.Tifrunner.gnm1.ann1.FGVY1L Arachis hypogaea HOM05D007474 ORTHO05D009367 4.5e-45 185.7 228 47.8
Oeu044666.1 Olea europaea HOM05D007474 ORTHO05D009367 1.2e-42 177.6 196 52.0
Sc11g0007970 Simmondsia chinensis HOM05D007474 ORTHO05D009367 7.9e-42 174.9 247 45.3
COL.COLO4_06926 Corchorus olitorius HOM05D007474 ORTHO05D009367 1.9e-40 170.2 196 51.5
MBI16_g28190_MAGBIO Magnolia biondii HOM05D007474 ORTHO05D009367 7.4e-40 168.3 202 49.0
Nitab4.5_0000056g0090 Nicotiana tabacum HOM05D007474 ORTHO05D009367 2.4e-38 163.3 271 41.3
EL10Ac2g04755 Beta vulgaris HOM05D007474 ORTHO05D009367 3.1e-38 162.9 244 42.2
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 3.1e-38 162.9 227 43.2
Os02g0148600 Oryza sativa ssp. japonica HOM05D007474 ORTHO05D009367 5.3e-38 162.2 245 42.0
PGR142G0563 Punica granatum HOM05D007474 ORTHO05D009367 5.3e-38 162.2 260 43.1
Zm00001eb232320 Zea mays HOM05D007474 ORTHO05D009367 1.2e-37 161.0 245 41.2
AUR62012086 Chenopodium quinoa HOM05D007474 ORTHO05D009367 2.2e-36 156.8 247 39.7
Eucgr.C00103 Eucalyptus grandis HOM05D007474 ORTHO05D009367 4.2e-35 152.5 142 57.7
AUR62039378 Chenopodium quinoa HOM05D007474 ORTHO05D009367 3.5e-34 149.4 247 39.7
Potri.018G141166 Populus trichocarpa HOM05D007474 ORTHO05D009367 7.4e-32 141.7 123 61.0
vmacro20808 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 2.1e-31 140.2 143 53.1
CSS0031812 Camellia sinensis var. sinensis HOM05D007474 ORTHO05D009367 4.8e-31 139.0 143 52.4
Ah.09g225720 Amaranthus hybridus HOM05D007474 ORTHO05D009367 1.1e-30 137.9 247 36.4
AUR62039384 Chenopodium quinoa HOM05D007474 ORTHO05D009367 5.8e-29 132.1 235 37.4
Hma1.2p1_0140F.1_g063730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 1.1e-27 127.9 119 55.5
Potri.018G141232 Populus trichocarpa HOM05D007474 ORTHO05D009367 2.7e-26 123.2 126 57.9
PGR142G3816 Punica granatum HOM05D007474 ORTHO05D009367 1.9e-24 117.1 117 52.1
Ca_02115_v3 Cicer arietinum L. HOM05D007474 ORTHO05D009367 7.2e-19 98.6 126 50.0
Lj4A313T24 Lonicera japonica HOM05D007474 ORTHO05D009367 2.5e-16 90.1 103 50.5
Hund13756 Selenicereus undatus HOM05D007474 ORTHO05D009367 7.4e-16 88.6 132 42.4
Actinidia07550 Actinidia chinensis HOM05D007474 ORTHO05D009367 2.0e-13 80.5 78 47.4
AUR62004543 Chenopodium quinoa HOM05D007474 ORTHO05D009367 2.2e-12 77.0 169 32.5
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 4.2e-11 72.8 243 27.2
Lju170C0T1 Lonicera japonica HOM05D007424 ORTHO05D009367 1.6e-10 70.9 98 42.9
QL04p011351 Quercus lobata HOM05D000009 ORTHO05D000008 6.1e-10 68.9 101 44.6
TWI63G1298 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 7.9e-10 68.6 100 43.0
Mapoly0011s0196 Marchantia polymorpha HOM05D007474 ORTHO05D009367 4.4e-08 62.8 264 23.1
arahy.Tifrunner.gnm1.ann1.245C1J Arachis hypogaea HOM05D007474 ORTHO05D009367 1.4e-06 57.8 65 43.1
arahy.Tifrunner.gnm1.ann1.TVY351 Arachis hypogaea HOM05D007474 ORTHO05D009367 1.8e-06 57.4 61 44.3


User provided reference genes

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