Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 6.3e-54 213.8 102 100.0
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 7.4e-47 190.3 103 90.3
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.0e-43 179.9 102 83.3
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 4.2e-42 174.5 103 84.5
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.1e-41 172.2 104 83.7
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 1.8e-37 159.1 106 77.4
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-35 152.5 106 71.7
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 3.8e-35 151.4 107 72.9
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 6.5e-35 150.6 107 70.1
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 8.5e-35 150.2 108 70.4
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-34 149.8 106 69.8
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 1.1e-29 133.3 95 69.5
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.4e-29 132.9 97 69.1
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.4e-29 132.9 97 69.1
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 5.4e-29 131.0 95 69.5
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 5.4e-29 131.0 97 67.0
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.2e-23 113.2 109 58.7
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 2.6e-23 112.1 111 55.0
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.3e-22 109.8 107 55.1
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 5.0e-19 97.8 102 51.0
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 5.6e-18 94.4 102 50.0
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.2e-17 93.2 106 45.3
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 3.6e-17 91.7 64 68.8
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 3.6e-17 91.7 64 68.8
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 4.7e-17 91.3 64 70.3
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 6.1e-17 90.9 62 66.1
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 8.0e-17 90.5 102 49.0
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 2.3e-16 89.0 102 49.0
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 2.3e-16 89.0 62 71.0
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 2.3e-16 89.0 62 71.0
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 2.3e-16 89.0 62 71.0
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 2.3e-16 89.0 69 58.0
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 6.8e-16 87.4 67 62.7
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.2e-15 86.7 71 53.5
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 4.4e-15 84.7 67 59.7
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 7.5e-15 84.0 116 37.9
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 7.5e-15 84.0 103 48.5
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 1.3e-14 83.2 73 49.3
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 2.2e-14 82.4 68 52.9
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.2e-14 82.4 73 50.7
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 2.2e-14 82.4 102 48.0
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 2.2e-14 82.4 68 61.8
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.2e-14 82.4 68 57.4
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.2e-14 82.4 68 57.4
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.7e-14 81.6 64 59.4
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 6.4e-14 80.9 68 57.4
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 6.4e-14 80.9 68 57.4
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.1e-13 80.1 68 55.9
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 1.1e-13 80.1 64 59.4
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.4e-13 79.7 69 53.6
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.4e-13 79.7 68 55.9
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.4e-13 79.7 64 56.2
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 2.4e-13 79.0 64 57.8
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 3.2e-13 78.6 62 59.7
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 4.1e-13 78.2 73 47.9
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.0e-13 77.4 62 58.1
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 7.0e-13 77.4 62 58.1
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 7.0e-13 77.4 93 46.2
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 7.0e-13 77.4 68 57.4
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 9.2e-13 77.0 65 56.9
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 2.7e-12 75.5 68 55.9
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 6.0e-12 74.3 102 45.1
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 1.0e-11 73.6 62 59.7
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.3e-11 73.2 73 43.8
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-11 72.8 73 43.8
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-11 72.8 88 39.8
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 1.7e-11 72.8 88 39.8
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 2.3e-11 72.4 87 40.2
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 2.3e-11 72.4 73 43.8
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 2.3e-11 72.4 71 45.1
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 2.3e-11 72.4 71 45.1
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 2.3e-11 72.4 73 43.8
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 3.0e-11 72.0 80 47.5
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 3.0e-11 72.0 101 45.5
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 3.9e-11 71.6 62 54.8
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 6.6e-11 70.9 63 60.3
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 6.6e-11 70.9 73 39.7
BcaC08g43286 Brassica carinata HOM05D004137 ORTHO05D004804 8.6e-11 70.5 81 49.4
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-10 70.1 73 39.7
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.1e-10 70.1 62 58.1
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.5e-10 69.7 80 51.2
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.5e-10 69.7 88 38.6
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 1.9e-10 69.3 86 46.5
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 1.9e-10 69.3 62 58.1
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 1.9e-10 69.3 69 49.3
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 3.3e-10 68.6 62 56.5
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 3.3e-10 68.6 91 44.0
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 4.3e-10 68.2 68 39.7
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 4.3e-10 68.2 68 39.7
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 4.3e-10 68.2 62 56.5
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 4.3e-10 68.2 62 56.5
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 5.6e-10 67.8 73 38.4
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 5.6e-10 67.8 62 53.2
A03p13340 Brassica napus HOM05D004137 ORTHO05D004804 7.3e-10 67.4 51 68.6
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 7.3e-10 67.4 93 38.7
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 9.5e-10 67.0 73 46.6
Aa31LG3G710 Aethionema arabicum HOM05D004137 ORTHO05D004804 9.5e-10 67.0 45 71.1
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 9.5e-10 67.0 62 51.6
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.5e-10 67.0 62 56.5
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 1.2e-09 66.6 69 46.4
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 2.1e-09 65.9 107 43.0
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 2.8e-09 65.5 63 52.4
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 3.6e-09 65.1 62 51.6
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 3.6e-09 65.1 68 50.0
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 3.6e-09 65.1 68 50.0
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 8.0e-09 63.9 68 45.6
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 1.1e-08 63.5 57 54.4
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.4e-08 63.2 62 51.6
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 1.8e-08 62.8 71 39.4
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 4.0e-08 61.6 49 57.1
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 5.2e-08 61.2 57 47.4
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 1.2e-07 60.1 61 52.5
CARHR088170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.5e-07 59.7 62 43.5
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 2.0e-07 59.3 64 50.0
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 2.0e-07 59.3 94 39.4
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 2.6e-07 58.9 62 51.6
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 3.4e-07 58.5 87 40.2
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 9.8e-07 57.0 79 43.0
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.2e-06 55.8 71 45.1
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.2e-06 55.8 71 45.1
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 2.9e-06 55.5 72 43.1
BcaB02g10824 Brassica carinata HOM05D004137 ORTHO05D004804 6.4e-06 54.3 62 40.3
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 6.4e-06 54.3 64 40.6
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 6.4e-06 54.3 64 40.6
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 8.3e-06 53.9 97 35.1
AL3G25410 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 8.3e-06 53.9 114 29.8
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.3e-06 53.9 74 37.8


User provided reference genes

Program Settings