Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 1.5e-98 362.8 185 100.0
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 7.1e-96 354.0 185 97.3
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 7.6e-90 334.0 186 92.5
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 9.9e-90 333.6 186 91.4
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 4.9e-89 331.3 186 90.9
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 4.6e-87 324.7 186 89.8
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 3.0e-86 322.0 186 89.8
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 3.0e-86 322.0 186 89.8
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 5.6e-85 317.8 188 88.8
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 1.2e-84 316.6 189 86.2
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 4.7e-84 314.7 197 83.2
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 2.2e-81 305.8 200 80.0
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 7.1e-80 300.8 189 84.1
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 1.6e-79 299.7 225 74.2
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 1.7e-73 279.6 166 88.6
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 3.5e-71 271.9 189 74.6
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 2.9e-65 252.3 151 84.1
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 4.2e-64 248.4 134 93.3
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.1e-63 246.1 188 67.0
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.1e-63 246.1 188 67.0
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 1.3e-60 236.9 185 72.4
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 2.1e-60 236.1 185 64.9
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 2.1e-60 236.1 185 63.8
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 3.7e-60 235.3 185 65.9
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 4.8e-60 235.0 186 65.1
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 6.2e-60 234.6 185 64.9
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 1.4e-59 233.4 186 64.0
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 1.8e-59 233.0 185 64.3
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 3.1e-59 232.3 185 64.3
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 5.3e-59 231.5 185 64.3
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 9.0e-59 230.7 185 63.2
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 9.0e-59 230.7 186 64.5
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 2.0e-58 229.6 186 65.1
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 2.0e-58 229.6 186 64.0
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 2.6e-58 229.2 185 65.4
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 3.4e-58 228.8 185 64.3
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 4.5e-58 228.4 186 61.8
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 2.2e-57 226.1 185 64.3
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 6.5e-57 224.6 189 61.4
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 8.4e-57 224.2 188 65.4
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 8.4e-57 224.2 190 63.7
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 1.9e-56 223.0 192 60.9
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 1.9e-56 223.0 187 60.4
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 2.5e-56 222.6 187 59.9
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 2.5e-56 222.6 185 60.5
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 2.5e-56 222.6 188 61.7
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 2.5e-56 222.6 190 63.2
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 3.2e-56 222.2 186 62.9
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 4.2e-56 221.9 187 63.1
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 4.2e-56 221.9 187 62.0
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 7.1e-56 221.1 186 59.1
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 9.3e-56 220.7 193 62.2
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 1.2e-55 220.3 187 61.0
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 2.7e-55 219.2 185 60.5
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 2.7e-55 219.2 185 60.5
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 2.7e-55 219.2 186 60.2
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 3.5e-55 218.8 186 60.8
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 6.0e-55 218.0 185 60.5
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 1.0e-54 217.2 187 61.5
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 1.8e-54 216.5 186 61.3
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 1.8e-54 216.5 188 60.1
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 2.3e-54 216.1 190 58.4
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 3.0e-54 215.7 186 59.7
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 5.1e-54 214.9 190 60.5
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 6.7e-54 214.5 188 59.6
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 1.9e-53 213.0 187 59.9
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 4.3e-53 211.8 187 58.3
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 1.3e-52 210.3 189 61.9
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 2.8e-52 209.1 186 59.7
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 6.3e-52 208.0 137 71.5
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 8.2e-52 207.6 141 70.2
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 1.1e-51 207.2 141 69.5
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 1.4e-51 206.8 137 71.5
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 1.4e-51 206.8 189 59.8
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 5.3e-51 204.9 186 58.6
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 9.0e-51 204.1 175 62.9
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 1.2e-50 203.8 132 72.7
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 1.0e-49 200.7 187 55.1
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 1.0e-49 200.7 233 50.6
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 1.3e-49 200.3 186 54.8
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 6.5e-49 198.0 214 52.3
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 6.5e-49 198.0 185 54.6
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 7.2e-48 194.5 185 56.2
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 9.3e-48 194.1 139 67.6
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 3.6e-47 192.2 186 54.3
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 8.7e-46 187.6 168 58.3
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 2.5e-45 186.0 189 54.0
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 4.3e-45 185.3 207 50.2
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 9.7e-45 184.1 148 66.2
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 3.7e-44 182.2 128 64.8
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 1.1e-43 180.6 148 60.8
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 2.4e-43 179.5 184 51.1
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 6.9e-43 177.9 149 59.7
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 3.8e-41 172.2 188 50.0
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 8.5e-41 171.0 192 50.0
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 1.4e-40 170.2 129 63.6
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 1.4e-38 163.7 190 50.0
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 6.7e-38 161.4 101 75.2
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 6.7e-38 161.4 135 65.2
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 1.8e-35 153.3 206 45.1
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 5.3e-35 151.8 91 74.7
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 1.9e-32 143.3 118 60.2
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 2.1e-31 139.8 126 61.1
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 9.7e-29 131.0 74 73.0
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 1.7e-28 130.2 169 47.3
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.0e-25 120.9 122 59.8
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.0e-25 120.9 122 59.8
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 1.7e-25 120.2 85 64.7
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 1.1e-24 117.5 201 39.8
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 2.0e-21 106.7 197 34.5
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 1.0e-17 94.4 169 37.9
arahy.Tifrunner.gnm1.ann1.XX62UZ Arachis hypogaea HOM05D006936 ORTHO05D008273 1.3e-17 94.0 114 53.5
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 1.7e-17 93.6 111 56.8
AUR62015785 Chenopodium quinoa HOM05D000355 ORTHO05D000227 1.9e-08 63.5 114 42.1
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 2.5e-08 63.2 47 61.7
DCAR_000990 Daucus carota HOM05D006936 ORTHO05D008273 1.0e-06 57.8 69 50.7


User provided reference genes

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