Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G25660 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.1e-89 333.2 165 100.0
AT4G27140 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 4.1e-79 298.1 165 87.9
AL7G25640 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.8e-66 256.1 167 77.2
AL7G25650 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 5.2e-66 254.6 169 77.5
Carub.0007s1370 Capsella rubella HOM05D007475 ORTHO05D009529 2.7e-62 242.3 163 73.6
CARHR289420 Cardamine hirsuta HOM05D007475 ORTHO05D009529 3.0e-61 238.8 162 75.9
AT4G27150 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 3.9e-61 238.4 171 71.3
AT4G27170 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 2.5e-60 235.7 172 70.9
Carub.0008s0615 Capsella rubella HOM05D007475 ORTHO05D009529 3.3e-60 235.3 166 73.5
CARHR058020 Cardamine hirsuta HOM05D007475 ORTHO05D009529 5.6e-60 234.6 172 71.5
Carub.0007s1369 Capsella rubella HOM05D007475 ORTHO05D009529 1.0e-58 230.3 169 72.2
Carub.0007s1367 Capsella rubella HOM05D007475 ORTHO05D009529 6.8e-58 227.6 169 70.4
Carub.0007s1368 Capsella rubella HOM05D007475 ORTHO05D009529 1.2e-57 226.9 172 68.6
AT4G27160 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 9.8e-57 223.8 173 68.8
BcaC09g50364 Brassica carinata HOM05D007475 ORTHO05D009529 3.1e-50 202.2 178 63.5
A01p20870 Brassica napus HOM05D007475 ORTHO05D009529 8.9e-50 200.7 179 62.6
BolC1t02261H Brassica oleracea HOM05D007475 ORTHO05D009529 8.9e-50 200.7 180 63.3
BraA01t02006Z Brassica rapa HOM05D007475 ORTHO05D009529 8.9e-50 200.7 179 62.6
A01p18280 Brassica napus HOM05D007475 ORTHO05D009529 1.5e-49 199.9 180 62.2
BolC1t02264H Brassica oleracea HOM05D007475 ORTHO05D009529 1.5e-49 199.9 184 59.2
BraA01t01784Z Brassica rapa HOM05D007475 ORTHO05D009529 1.5e-49 199.9 180 62.8
BolC1t02262H Brassica oleracea HOM05D007475 ORTHO05D009529 2.0e-49 199.5 181 61.9
BolC1t02563H Brassica oleracea HOM05D007475 ORTHO05D009529 2.6e-49 199.1 178 62.9
BcaC09g49369 Brassica carinata HOM05D007475 ORTHO05D009529 4.4e-49 198.4 180 61.7
C01p23280 Brassica napus HOM05D007475 ORTHO05D009529 4.4e-49 198.4 180 61.7
C01p37410 Brassica napus HOM05D007475 ORTHO05D009529 4.4e-49 198.4 180 61.7
BolC1t02266H Brassica oleracea HOM05D007475 ORTHO05D009529 4.4e-49 198.4 184 58.7
BolC1t03708H Brassica oleracea HOM05D007475 ORTHO05D009529 4.4e-49 198.4 180 61.7
C01p23290 Brassica napus HOM05D007475 ORTHO05D009529 5.8e-49 198.0 181 61.9
A01p18300 Brassica napus HOM05D007475 ORTHO05D009529 9.8e-49 197.2 180 62.2
C01p26200 Brassica napus HOM05D007475 ORTHO05D009529 9.8e-49 197.2 178 62.4
BcaC09g50606 Brassica carinata HOM05D007475 ORTHO05D009529 2.2e-48 196.1 183 59.0
C01p23300 Brassica napus HOM05D007475 ORTHO05D009529 2.9e-48 195.7 184 58.2
BcaC09g50609 Brassica carinata HOM05D007475 ORTHO05D009529 6.4e-48 194.5 180 60.6
Thhalv10026791m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 6.4e-48 194.5 183 61.7
BraA01t01786Z Brassica rapa HOM05D007475 ORTHO05D009529 1.9e-47 193.0 180 58.3
BcaNung00178 Brassica carinata HOM05D007475 ORTHO05D009529 2.4e-47 192.6 178 60.7
BcaNung00179 Brassica carinata HOM05D007475 ORTHO05D009529 2.4e-47 192.6 178 60.7
A03p57140 Brassica napus HOM05D007475 ORTHO05D009529 3.2e-47 192.2 166 62.0
BraA03t14781Z Brassica rapa HOM05D007475 ORTHO05D009529 3.2e-47 192.2 180 58.9
C07p55330 Brassica napus HOM05D007475 ORTHO05D009529 9.2e-47 190.7 166 61.4
BolC7t46014H Brassica oleracea HOM05D007475 ORTHO05D009529 9.2e-47 190.7 166 61.4
A01p18330 Brassica napus HOM05D007475 ORTHO05D009529 1.2e-46 190.3 183 59.0
BraA01t01783Z Brassica rapa HOM05D007475 ORTHO05D009529 1.2e-46 190.3 183 59.0
BraA01t01785Z Brassica rapa HOM05D007475 ORTHO05D009529 1.2e-46 190.3 183 59.0
A01p18310 Brassica napus HOM05D007475 ORTHO05D009529 1.6e-46 189.9 180 61.1
A01p18340 Brassica napus HOM05D007475 ORTHO05D009529 1.6e-46 189.9 183 57.9
A03p57110 Brassica napus HOM05D007475 ORTHO05D009529 2.7e-46 189.1 176 60.2
BcaC07g38274 Brassica carinata HOM05D007475 ORTHO05D009529 6.0e-46 188.0 173 61.3
C08p10230 Brassica napus HOM05D007475 ORTHO05D009529 6.0e-46 188.0 173 61.3
CARHR289410 Cardamine hirsuta HOM05D007475 ORTHO05D009529 7.8e-46 187.6 165 61.8
BraA01t01782Z Brassica rapa HOM05D007475 ORTHO05D009529 1.1e-44 183.7 205 55.1
BcaC06g32708 Brassica carinata HOM05D007475 ORTHO05D009529 1.9e-44 183.0 165 61.8
BraA08t34007Z Brassica rapa HOM05D007475 ORTHO05D009529 9.5e-44 180.6 173 59.5
BcaNung03055 Brassica carinata HOM05D007475 ORTHO05D009529 1.2e-43 180.3 183 57.4
Aa31LG5G10270 Aethionema arabicum HOM05D007475 ORTHO05D009529 2.1e-43 179.5 168 58.9
BcaB03g12530 Brassica carinata HOM05D007475 ORTHO05D009529 2.8e-43 179.1 178 57.9
BcaNung03054 Brassica carinata HOM05D007475 ORTHO05D009529 2.8e-43 179.1 190 51.6
BcaB01g05180 Brassica carinata HOM05D007475 ORTHO05D009529 4.7e-43 178.3 187 55.6
C03p10150 Brassica napus HOM05D007475 ORTHO05D009529 4.7e-43 178.3 187 55.6
BolC3t13500H Brassica oleracea HOM05D007475 ORTHO05D009529 4.7e-43 178.3 187 55.6
BraA03t10193Z Brassica rapa HOM05D007475 ORTHO05D009529 4.7e-43 178.3 187 55.6
BcaC09g50602 Brassica carinata HOM05D007475 ORTHO05D009529 6.2e-43 177.9 183 55.7
BcaNung03058 Brassica carinata HOM05D007475 ORTHO05D009529 1.4e-42 176.8 198 51.5
CARHR234800 Cardamine hirsuta HOM05D007475 ORTHO05D009529 1.4e-42 176.8 129 72.9
Aa31LG5G10280 Aethionema arabicum HOM05D007475 ORTHO05D009529 6.8e-42 174.5 161 60.2
A08p20510 Brassica napus HOM05D007475 ORTHO05D009529 3.4e-41 172.2 173 58.4
AT5G54740 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 1.1e-36 157.1 163 55.2
A03p08700 Brassica napus HOM05D007475 ORTHO05D009529 1.5e-36 156.8 138 63.8
Sp6g16690 Schrenkiella parvula HOM05D007475 ORTHO05D009529 5.6e-36 154.8 163 54.0
Sp7g25120 Schrenkiella parvula HOM05D007475 ORTHO05D009529 5.6e-36 154.8 184 50.5
AL8G30160 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.2e-35 153.7 163 52.8
Thhalv10015934m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 6.2e-35 151.4 161 56.5
Aa31LG3G10660 Aethionema arabicum HOM05D007475 ORTHO05D009529 1.1e-34 150.6 164 53.0
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 8.9e-34 147.5 162 52.5
THA.LOC104799881 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.2e-31 139.0 158 51.9
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 9.3e-31 137.5 158 51.9
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 9.3e-31 137.5 158 51.9
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 9.3e-31 137.5 158 51.9
THA.LOC104799882 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.7e-30 136.0 158 51.3
THA.LOC104817654 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 8.7e-29 131.0 153 49.7
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.5e-28 129.4 156 46.8
THA.LOC104817655 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.4e-25 119.0 152 46.7
BcaC09g50612 Brassica carinata HOM05D007475 ORTHO05D009529 8.4e-24 114.4 99 60.6
BcaC09g50610 Brassica carinata HOM05D007475 ORTHO05D009529 9.3e-23 110.9 99 59.6
BcaB08g35832 Brassica carinata HOM05D007475 ORTHO05D009529 2.7e-22 109.4 134 50.7
Cpa.g.sc10.244 Carica papaya HOM05D007475 ORTHO05D009529 1.5e-20 103.6 159 41.5
THA.LOC104809798 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.9e-20 103.2 138 44.2
Cpa.g.sc10.249 Carica papaya HOM05D007475 ORTHO05D009529 1.2e-17 94.0 159 39.0
BolC8t48701H Brassica oleracea HOM05D007475 ORTHO05D009529 2.0e-17 93.2 78 61.5
Cpa.g.sc10.239 Carica papaya HOM05D007475 ORTHO05D009529 1.7e-16 90.1 168 37.5
Cpa.g.sc10.251 Carica papaya HOM05D007475 ORTHO05D009529 1.7e-16 90.1 168 37.5
BcaC09g50613 Brassica carinata HOM05D007475 ORTHO05D009529 3.8e-16 89.0 62 74.2
Ciclev10009848m.g Citrus clementina HOM05D007475 ORTHO05D005877 3.8e-16 89.0 153 35.3
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 8.4e-16 87.8 153 37.3
Cpa.g.sc10.243 Carica papaya HOM05D007475 ORTHO05D009529 1.9e-15 86.7 162 37.0
BcaC09g50611 Brassica carinata HOM05D007475 ORTHO05D009529 1.2e-14 84.0 62 71.0
Ciclev10009789m.g Citrus clementina HOM05D007475 ORTHO05D009529 7.9e-14 81.3 161 34.2
Sp7g25110 Schrenkiella parvula HOM05D007475 ORTHO05D009529 1.3e-13 80.5 71 64.8
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 3.3e-12 75.9 158 33.5
Peaxi162Scf00714g00425 Petunia axillaris HOM05D006536 ORTHO05D005877 2.8e-11 72.8 161 32.3
Cfa020407 Carpinus fangiana HOM05D006536 ORTHO05D005877 1.1e-10 70.9 147 33.3
Manes.15G075900 Manihot esculenta HOM05D007475 ORTHO05D005877 2.4e-10 69.7 147 34.7
Sopen08g028810 Solanum pennellii HOM05D006536 ORTHO05D005877 3.1e-10 69.3 114 36.0
Cfa020408 Carpinus fangiana HOM05D006536 ORTHO05D005877 4.5e-09 65.5 147 29.9
Manes.03G123600 Manihot esculenta HOM05D006536 ORTHO05D005877 4.5e-09 65.5 144 30.6
Thecc.07G051300 Theobroma cacao HOM05D006536 ORTHO05D005877 4.5e-09 65.5 144 29.2
SHI26637 Sapria himalayana HOM05D006536 ORTHO05D005877 7.6e-09 64.7 159 29.6
Atru.chr2.3226 Acer truncatum HOM05D001264 ORTHO05D001167 1.0e-08 64.3 104 37.5
SHI26638 Sapria himalayana HOM05D006536 ORTHO05D005877 2.2e-08 63.2 154 29.9
CAN.G981.16 Capsicum annuum HOM05D006536 ORTHO05D005877 4.9e-08 62.0 148 28.4
CiPaw.12G126700 Carya illinoinensis HOM05D006536 ORTHO05D005877 4.9e-08 62.0 147 30.6
Sed0024994 Sechium edule HOM05D006536 ORTHO05D005877 6.5e-08 61.6 142 35.2
Eucgr.F03431 Eucalyptus grandis HOM05D006536 ORTHO05D005877 2.5e-07 59.7 160 30.6
HanXRQChr11g0332911 Helianthus annuus HOM05D009374 ORTHO05D012864 5.5e-07 58.5 151 32.5
Migut.J01038 Erythranthe guttata HOM05D006536 ORTHO05D005877 9.3e-07 57.8 115 27.8
HanXRQChr11g0332931 Helianthus annuus HOM05D009374 ORTHO05D012864 9.3e-07 57.8 150 32.7
SHI26633 Sapria himalayana HOM05D006536 ORTHO05D005877 9.3e-07 57.8 147 27.2
EL10Ac4g07942 Beta vulgaris HOM05D009374 ORTHO05D005877 2.7e-06 56.2 149 28.9
PGR083G0291 Punica granatum HOM05D006536 ORTHO05D005877 2.7e-06 56.2 149 28.2
PGR083G1686 Punica granatum HOM05D006536 ORTHO05D005877 2.7e-06 56.2 137 29.2
COL.COLO4_09579 Corchorus olitorius HOM05D006536 ORTHO05D005877 3.5e-06 55.8 144 29.9
Solyc08g080480.3 Solanum lycopersicum HOM05D006536 ORTHO05D005877 3.5e-06 55.8 154 27.9
BcaNung00181 Brassica carinata HOM05D007475 ORTHO05D009529 4.6e-06 55.5 91 41.8
SHI31832 Sapria himalayana HOM05D006536 ORTHO05D005877 4.6e-06 55.5 140 28.6
PGSC0003DMG400001033 Solanum tuberosum HOM05D006536 ORTHO05D005877 4.6e-06 55.5 152 31.6
COL.COLO4_09580 Corchorus olitorius HOM05D015826 ORTHO05D005877 6.0e-06 55.1 152 27.0
Duzib268G0059 Durio zibethinus HOM05D006536 ORTHO05D005877 6.0e-06 55.1 144 25.0
Nitab4.5_0000397g0170 Nicotiana tabacum HOM05D006536 ORTHO05D005877 6.0e-06 55.1 150 34.0


User provided reference genes

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