Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G25650 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.7e-93 345.9 168 100.0
AL7G25640 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 6.4e-88 327.4 168 95.2
AT4G27150 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 2.6e-81 305.4 170 85.9
AT4G27160 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 9.3e-79 297.0 172 86.0
Carub.0007s1369 Capsella rubella HOM05D007475 ORTHO05D009529 5.7e-68 261.2 169 79.3
Carub.0007s1367 Capsella rubella HOM05D007475 ORTHO05D009529 1.1e-66 256.9 169 77.5
AL7G25660 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.4e-66 256.5 169 77.5
CARHR058020 Cardamine hirsuta HOM05D007475 ORTHO05D009529 2.0e-65 252.7 173 74.6
AT4G27140 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 5.9e-65 251.1 169 77.5
Carub.0007s1368 Capsella rubella HOM05D007475 ORTHO05D009529 6.5e-64 247.7 173 72.3
AT4G27170 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 1.9e-63 246.1 173 74.0
Carub.0007s1370 Capsella rubella HOM05D007475 ORTHO05D009529 1.6e-59 233.0 166 69.9
CARHR289420 Cardamine hirsuta HOM05D007475 ORTHO05D009529 3.4e-57 225.3 162 72.2
Carub.0008s0615 Capsella rubella HOM05D007475 ORTHO05D009529 5.9e-57 224.6 169 69.8
BraA03t14781Z Brassica rapa HOM05D007475 ORTHO05D009529 7.7e-57 224.2 181 65.7
A03p57110 Brassica napus HOM05D007475 ORTHO05D009529 1.1e-52 210.3 176 64.8
BcaC09g50364 Brassica carinata HOM05D007475 ORTHO05D009529 3.3e-52 208.8 174 64.9
A03p57140 Brassica napus HOM05D007475 ORTHO05D009529 7.4e-52 207.6 169 62.7
BolC1t02261H Brassica oleracea HOM05D007475 ORTHO05D009529 1.7e-51 206.5 176 64.2
C07p55330 Brassica napus HOM05D007475 ORTHO05D009529 2.2e-51 206.1 169 62.1
BolC7t46014H Brassica oleracea HOM05D007475 ORTHO05D009529 2.2e-51 206.1 169 62.1
BolC1t02563H Brassica oleracea HOM05D007475 ORTHO05D009529 2.8e-51 205.7 174 64.4
A01p20870 Brassica napus HOM05D007475 ORTHO05D009529 4.8e-51 204.9 175 63.4
BolC1t02264H Brassica oleracea HOM05D007475 ORTHO05D009529 4.8e-51 204.9 186 61.8
BraA01t02006Z Brassica rapa HOM05D007475 ORTHO05D009529 4.8e-51 204.9 175 63.4
BraA01t01784Z Brassica rapa HOM05D007475 ORTHO05D009529 6.3e-51 204.5 176 63.1
C01p26200 Brassica napus HOM05D007475 ORTHO05D009529 1.1e-50 203.8 174 63.8
BolC1t02266H Brassica oleracea HOM05D007475 ORTHO05D009529 1.4e-50 203.4 186 61.3
BcaC06g32708 Brassica carinata HOM05D007475 ORTHO05D009529 2.4e-50 202.6 167 64.1
C01p23290 Brassica napus HOM05D007475 ORTHO05D009529 2.4e-50 202.6 183 62.8
BraA01t01786Z Brassica rapa HOM05D007475 ORTHO05D009529 3.1e-50 202.2 182 62.1
BcaC09g49369 Brassica carinata HOM05D007475 ORTHO05D009529 4.1e-50 201.8 176 63.1
A01p18300 Brassica napus HOM05D007475 ORTHO05D009529 4.1e-50 201.8 176 62.5
C01p23280 Brassica napus HOM05D007475 ORTHO05D009529 4.1e-50 201.8 176 63.1
C01p37410 Brassica napus HOM05D007475 ORTHO05D009529 4.1e-50 201.8 176 63.1
BolC1t02262H Brassica oleracea HOM05D007475 ORTHO05D009529 4.1e-50 201.8 183 62.3
BolC1t03708H Brassica oleracea HOM05D007475 ORTHO05D009529 4.1e-50 201.8 176 63.1
A01p18280 Brassica napus HOM05D007475 ORTHO05D009529 5.3e-50 201.4 176 61.9
C01p23300 Brassica napus HOM05D007475 ORTHO05D009529 5.3e-50 201.4 186 60.8
BcaNung00178 Brassica carinata HOM05D007475 ORTHO05D009529 6.9e-50 201.1 174 63.2
BcaNung00179 Brassica carinata HOM05D007475 ORTHO05D009529 6.9e-50 201.1 174 63.2
BcaC09g50606 Brassica carinata HOM05D007475 ORTHO05D009529 2.6e-49 199.1 179 61.5
BcaC09g50609 Brassica carinata HOM05D007475 ORTHO05D009529 5.9e-49 198.0 176 61.9
BcaNung03054 Brassica carinata HOM05D007475 ORTHO05D009529 1.3e-48 196.8 199 55.3
CARHR289410 Cardamine hirsuta HOM05D007475 ORTHO05D009529 1.3e-48 196.8 168 62.5
BcaC07g38274 Brassica carinata HOM05D007475 ORTHO05D009529 6.5e-48 194.5 173 60.1
A01p18310 Brassica napus HOM05D007475 ORTHO05D009529 6.5e-48 194.5 176 61.4
C08p10230 Brassica napus HOM05D007475 ORTHO05D009529 6.5e-48 194.5 173 60.1
Aa31LG5G10270 Aethionema arabicum HOM05D007475 ORTHO05D009529 1.1e-47 193.7 169 60.9
A01p18330 Brassica napus HOM05D007475 ORTHO05D009529 1.4e-47 193.4 179 61.5
BraA01t01783Z Brassica rapa HOM05D007475 ORTHO05D009529 1.4e-47 193.4 179 61.5
BraA01t01785Z Brassica rapa HOM05D007475 ORTHO05D009529 1.4e-47 193.4 179 61.5
Aa31LG5G10280 Aethionema arabicum HOM05D007475 ORTHO05D009529 2.5e-47 192.6 160 61.9
A01p18340 Brassica napus HOM05D007475 ORTHO05D009529 2.5e-47 192.6 185 59.5
BcaB01g05180 Brassica carinata HOM05D007475 ORTHO05D009529 2.1e-46 189.5 188 58.5
C03p10150 Brassica napus HOM05D007475 ORTHO05D009529 2.1e-46 189.5 188 58.5
BolC3t13500H Brassica oleracea HOM05D007475 ORTHO05D009529 2.1e-46 189.5 188 58.5
BraA03t10193Z Brassica rapa HOM05D007475 ORTHO05D009529 2.1e-46 189.5 188 58.5
BcaB03g12530 Brassica carinata HOM05D007475 ORTHO05D009529 4.7e-46 188.3 178 57.9
BraA01t01782Z Brassica rapa HOM05D007475 ORTHO05D009529 7.9e-46 187.6 201 54.2
BraA08t34007Z Brassica rapa HOM05D007475 ORTHO05D009529 1.0e-45 187.2 173 58.4
Thhalv10026791m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 1.4e-45 186.8 183 60.1
BcaNung03058 Brassica carinata HOM05D007475 ORTHO05D009529 2.3e-45 186.0 194 54.1
BcaNung03055 Brassica carinata HOM05D007475 ORTHO05D009529 3.0e-45 185.7 179 59.2
CARHR234800 Cardamine hirsuta HOM05D007475 ORTHO05D009529 5.1e-45 184.9 130 74.6
BcaC09g50602 Brassica carinata HOM05D007475 ORTHO05D009529 9.7e-44 180.6 185 57.3
A08p20510 Brassica napus HOM05D007475 ORTHO05D009529 3.7e-43 178.7 173 57.2
Sp7g25120 Schrenkiella parvula HOM05D007475 ORTHO05D009529 5.5e-39 164.9 181 50.8
A03p08700 Brassica napus HOM05D007475 ORTHO05D009529 1.2e-38 163.7 134 67.9
Sp6g16690 Schrenkiella parvula HOM05D007475 ORTHO05D009529 8.8e-37 157.5 165 53.9
AT5G54740 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 2.0e-36 156.4 164 53.7
Thhalv10015934m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 9.7e-36 154.1 163 54.6
AL8G30160 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 4.8e-35 151.8 164 51.8
Aa31LG3G10660 Aethionema arabicum HOM05D007475 ORTHO05D009529 2.4e-34 149.4 155 52.9
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 7.0e-34 147.9 159 51.6
THA.LOC104799881 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.5e-31 140.2 159 50.3
THA.LOC104799882 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 9.4e-31 137.5 159 49.1
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.6e-30 136.7 157 46.5
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.1e-30 136.3 159 49.7
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.1e-30 136.3 159 49.7
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.1e-30 136.3 159 49.7
THA.LOC104817654 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 8.8e-29 131.0 159 47.2
Cpa.g.sc10.244 Carica papaya HOM05D007475 ORTHO05D009529 7.7e-25 117.9 158 43.7
BcaC09g50612 Brassica carinata HOM05D007475 ORTHO05D009529 3.8e-24 115.5 97 59.8
BcaC09g50610 Brassica carinata HOM05D007475 ORTHO05D009529 6.5e-24 114.8 97 59.8
THA.LOC104817655 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.5e-24 114.8 156 43.6
BcaB08g35832 Brassica carinata HOM05D007475 ORTHO05D009529 1.9e-23 113.2 134 53.7
Cpa.g.sc10.249 Carica papaya HOM05D007475 ORTHO05D009529 6.8e-21 104.8 158 39.9
Cpa.g.sc10.251 Carica papaya HOM05D007475 ORTHO05D009529 1.5e-20 103.6 164 39.6
Cpa.g.sc10.239 Carica papaya HOM05D007475 ORTHO05D009529 2.0e-20 103.2 164 39.6
THA.LOC104809798 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 9.8e-20 100.9 139 41.7
Ciclev10009848m.g Citrus clementina HOM05D007475 ORTHO05D005877 1.3e-19 100.5 161 40.4
Cpa.g.sc10.243 Carica papaya HOM05D007475 ORTHO05D009529 3.7e-19 99.0 161 38.5
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 1.2e-17 94.0 154 39.0
BolC8t48701H Brassica oleracea HOM05D007475 ORTHO05D009529 5.0e-16 88.6 89 51.7
BcaC09g50613 Brassica carinata HOM05D007475 ORTHO05D009529 1.5e-15 87.0 62 75.8
BcaC09g50611 Brassica carinata HOM05D007475 ORTHO05D009529 1.0e-13 80.9 62 71.0
Sp7g25110 Schrenkiella parvula HOM05D007475 ORTHO05D009529 1.8e-13 80.1 75 57.3
Ciclev10009789m.g Citrus clementina HOM05D007475 ORTHO05D009529 2.0e-12 76.6 164 34.8
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 3.4e-12 75.9 164 34.1
Manes.15G075900 Manihot esculenta HOM05D007475 ORTHO05D005877 1.7e-11 73.6 148 33.8
Thecc.07G051300 Theobroma cacao HOM05D006536 ORTHO05D005877 1.7e-11 73.6 155 32.9
Atru.chr2.3226 Acer truncatum HOM05D001264 ORTHO05D001167 4.9e-11 72.0 126 35.7
Peaxi162Scf00714g00425 Petunia axillaris HOM05D006536 ORTHO05D005877 6.4e-11 71.6 152 32.9
Sopen08g028810 Solanum pennellii HOM05D006536 ORTHO05D005877 1.1e-10 70.9 132 36.4
Cfa020407 Carpinus fangiana HOM05D006536 ORTHO05D005877 2.7e-09 66.2 148 32.4
Migut.J01041 Erythranthe guttata HOM05D006536 ORTHO05D005877 3.5e-09 65.9 157 28.0
Peaxi162Scf00450g00873 Petunia axillaris HOM05D006536 ORTHO05D005877 3.5e-09 65.9 153 34.6
Migut.J01035 Erythranthe guttata HOM05D006536 ORTHO05D005877 5.9e-09 65.1 159 30.2
Peaxi162Scf00057g00136 Petunia axillaris HOM05D006536 ORTHO05D005877 7.8e-09 64.7 150 34.7
HanXRQChr11g0332911 Helianthus annuus HOM05D009374 ORTHO05D012864 1.0e-08 64.3 155 33.5
Dinv26537 Davidia involucrata HOM05D006536 ORTHO05D005877 2.3e-08 63.2 153 32.7
HanXRQChr11g0332931 Helianthus annuus HOM05D009374 ORTHO05D012864 2.3e-08 63.2 154 33.1
COL.COLO4_09579 Corchorus olitorius HOM05D006536 ORTHO05D005877 3.0e-08 62.8 159 31.4
Cfa020408 Carpinus fangiana HOM05D006536 ORTHO05D005877 5.0e-08 62.0 149 29.5
SGA_v2.0_scaffold13G06717 Striga asiatica HOM05D006536 ORTHO05D005877 8.6e-08 61.2 127 33.1
PGSC0003DMG400001033 Solanum tuberosum HOM05D006536 ORTHO05D005877 1.9e-07 60.1 153 31.4
Peaxi162Scf00450g00816 Petunia axillaris HOM05D006536 ORTHO05D005877 2.5e-07 59.7 149 32.2
Nitab4.5_0000397g0170 Nicotiana tabacum HOM05D006536 ORTHO05D005877 3.3e-07 59.3 153 32.0
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 7.3e-07 58.2 152 30.9
Nitab4.5_0004487g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 7.3e-07 58.2 114 35.1
PGR083G1686 Punica granatum HOM05D006536 ORTHO05D005877 7.3e-07 58.2 130 33.1
Solyc07g064210.2 Solanum lycopersicum HOM05D006536 ORTHO05D005877 9.5e-07 57.8 148 33.1
unitig_8.g4307 Utricularia gibba HOM05D006536 ORTHO05D005877 1.2e-06 57.4 163 30.7
CDE05G1907 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 1.6e-06 57.0 141 31.9
PGR083G0291 Punica granatum HOM05D006536 ORTHO05D005877 1.6e-06 57.0 157 29.9
Duzib268G0059 Durio zibethinus HOM05D006536 ORTHO05D005877 2.1e-06 56.6 147 25.9
unitig_744.g24698 Utricularia gibba HOM05D009374 ORTHO05D005877 4.7e-06 55.5 152 28.3
ECA236G4404 Erigeron canadensis HOM05D009374 ORTHO05D012864 6.2e-06 55.1 147 32.0
Peaxi162Scf00714g00424 Petunia axillaris HOM05D006536 ORTHO05D005877 6.2e-06 55.1 160 30.6
SalBow3G0084 Salvia bowleyana HOM05D003262 ORTHO05D003608 6.2e-06 55.1 163 28.2
CANSAT11G1392 Cannabis sativa HOM05D006536 ORTHO05D005877 8.0e-06 54.7 124 32.3
SGA_v2.0_scaffold13G06718 Striga asiatica HOM05D006536 ORTHO05D005877 8.0e-06 54.7 118 33.1


User provided reference genes

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