Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.6e-186 656.0 342 100.0
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 3.1e-166 588.6 343 88.0
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 9.5e-163 577.0 345 87.8
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.8e-161 572.8 342 84.5
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.5e-160 569.7 343 88.0
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.8e-158 562.8 341 84.5
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 2.5e-155 552.4 344 82.8
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 2.3e-140 502.7 345 79.1
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 3.9e-140 501.9 344 79.1
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 1.5e-139 500.0 345 78.0
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 3.3e-139 498.8 344 78.2
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.1e-137 493.8 352 77.6
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 1.8e-137 493.0 343 77.3
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 1.8e-137 493.0 343 77.3
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 5.2e-137 491.5 348 77.9
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 8.9e-137 490.7 353 77.9
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 7.6e-136 487.6 345 76.2
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 2.9e-135 485.7 341 73.9
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 4.4e-128 461.8 342 71.9
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.9e-126 456.4 342 71.9
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.6e-125 453.4 343 70.8
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.7e-124 449.9 344 70.3
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.5e-123 446.8 343 71.1
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 5.6e-123 444.9 343 70.8
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 6.2e-122 441.4 342 69.6
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 7.6e-120 434.5 342 72.8
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 9.9e-120 434.1 343 70.6
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.3e-119 433.7 343 70.6
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-117 427.2 343 70.0
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.2e-117 427.2 343 70.0
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 3.9e-116 422.2 343 70.6
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.6e-114 416.8 347 64.3
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 8.1e-114 414.5 346 63.9
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.8e-113 413.3 347 62.8
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 6.9e-113 411.4 348 63.8
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.5e-112 410.2 347 63.1
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 4.5e-112 408.7 348 63.8
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 5.8e-112 408.3 348 63.5
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 9.9e-112 407.5 349 63.0
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.3e-111 407.1 340 63.8
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 2.9e-111 406.0 348 62.6
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.8e-111 405.6 345 67.0
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 4.9e-111 405.2 360 61.4
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 6.4e-111 404.8 349 63.3
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.2e-109 400.6 349 63.3
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.8e-108 396.7 349 63.3
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 5.1e-108 395.2 348 61.8
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.1e-107 394.0 347 61.7
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 1.5e-107 393.7 348 62.9
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.9e-107 393.3 347 61.7
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 5.6e-107 391.7 348 61.8
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 4.8e-106 388.7 353 61.2
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 6.2e-106 388.3 352 61.6
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 1.4e-105 387.1 355 59.7
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 2.4e-105 386.3 349 59.6
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.3e-105 385.2 347 62.2
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.2e-104 384.0 347 61.1
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.5e-104 382.1 347 62.0
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 5.8e-104 381.7 349 61.6
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 7.6e-104 381.3 349 59.6
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.7e-103 380.2 348 60.3
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.8e-103 379.0 347 61.7
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 7.1e-102 374.8 350 61.1
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 2.7e-101 372.9 407 54.5
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 2.7e-101 372.9 353 60.3
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 4.6e-101 372.1 352 61.1
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 7.9e-101 371.3 349 58.5
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.8e-100 370.2 388 55.4
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 1.8e-100 370.2 348 58.6
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 5.7e-99 365.2 349 57.9
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 5.7e-99 365.2 345 61.2
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 7.4e-99 364.8 350 58.6
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.3e-98 364.0 343 59.2
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 3.7e-98 362.5 345 60.6
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 4.8e-98 362.1 349 57.3
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 4.1e-97 359.0 349 58.7
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 5.3e-97 358.6 356 57.6
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 5.3e-97 358.6 349 59.6
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 6.9e-97 358.2 347 57.9
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 3.4e-96 355.9 331 62.8
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 5.9e-96 355.1 348 56.0
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 7.6e-96 354.8 349 57.6
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.0e-95 354.4 349 57.0
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.0e-95 354.4 349 57.3
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.7e-95 353.6 346 57.5
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 2.2e-95 353.2 348 57.2
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.1e-94 350.9 347 56.5
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 2.5e-94 349.7 417 51.1
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 5.5e-94 348.6 349 56.4
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 3.6e-93 345.9 349 59.3
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 6.1e-93 345.1 348 57.5
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 7.9e-93 344.7 349 57.0
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.3e-92 343.2 353 57.2
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 8.8e-92 341.3 352 57.1
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 8.8e-92 341.3 350 58.3
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 3.3e-91 339.3 351 57.3
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 7.4e-91 338.2 349 58.2
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 2.2e-90 336.7 349 57.0
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 4.8e-90 335.5 330 59.7
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 6.3e-90 335.1 350 56.6
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 8.2e-90 334.7 398 52.3
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 8.2e-90 334.7 339 58.1
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.4e-89 333.2 350 56.3
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 5.3e-89 332.0 351 56.1
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.6e-88 329.7 362 57.2
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 3.4e-88 329.3 327 59.3
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 3.4e-88 329.3 344 56.7
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.0e-87 327.8 351 55.6
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 3.8e-87 325.9 284 60.6
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 1.1e-86 324.3 343 56.0
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 1.4e-86 323.9 348 54.6
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.6e-85 320.5 304 60.2
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.6e-85 320.5 330 58.5
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.7e-85 319.7 318 59.1
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 2.7e-85 319.7 349 53.6
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 4.7e-85 318.9 349 53.6
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 7.9e-85 318.2 325 56.6
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.0e-84 317.8 349 54.4
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 1.0e-84 317.8 347 52.4
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 3.9e-84 315.8 349 54.2
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 8.8e-84 314.7 348 54.9
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 2.0e-83 313.5 353 53.8
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 2.6e-83 313.2 347 52.4
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 2.2e-82 310.1 347 52.7
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.2e-80 304.3 352 50.6
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.0e-80 303.5 350 50.9
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.0e-79 301.2 341 55.7
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 9.4e-78 294.7 256 66.4
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.2e-77 294.3 203 79.8
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 4.7e-77 292.4 345 52.8
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 6.7e-76 288.5 333 50.5
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 2.0e-75 287.0 330 52.1
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 5.7e-75 285.4 345 50.7
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.7e-74 283.9 346 48.6
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.8e-74 283.1 343 50.7
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 3.7e-74 282.7 354 48.3
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 8.2e-74 281.6 346 49.4
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 7.0e-73 278.5 243 61.7
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.2e-72 277.7 348 48.9
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 7.7e-72 275.0 346 47.7
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.7e-69 266.5 277 57.0
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.3e-68 263.5 362 47.2
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.8e-66 256.5 263 57.4
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.7e-61 240.0 321 49.5
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 1.4e-52 211.1 265 50.2
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.8e-49 200.7 341 42.8
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 1.7e-31 141.0 398 32.4
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 7.3e-30 135.6 253 39.1
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 9.5e-30 135.2 353 31.7
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.5e-27 127.9 149 51.7
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.5e-19 101.3 156 43.6
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 3.5e-16 90.1 158 38.0
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 4.6e-16 89.7 109 45.9
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 3.8e-10 70.1 65 58.5
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 4.6e-08 63.2 42 78.6
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 5.1e-07 59.7 365 24.7
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 2.5e-06 57.4 174 29.3
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 9.6e-06 55.5 389 23.7


User provided reference genes

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