Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 7.6e-101 370.5 192 100.0
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.7e-98 362.1 192 97.4
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.7e-89 332.8 193 89.6
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 4.8e-87 324.7 197 88.3
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 9.3e-83 310.5 193 85.5
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.7e-82 308.9 196 83.7
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 3.0e-81 305.4 195 82.1
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 5.1e-81 304.7 202 79.7
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.6e-79 299.7 203 80.8
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 6.2e-79 297.7 204 80.4
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.8e-78 296.2 202 79.7
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 4.0e-78 295.0 203 79.8
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 6.9e-78 294.3 184 83.7
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 6.9e-78 294.3 184 83.7
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 2.0e-77 292.7 184 83.2
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 9.9e-77 290.4 200 80.0
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 9.9e-77 290.4 200 80.0
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 9.9e-77 290.4 206 78.6
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 2.9e-76 288.9 203 77.8
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 4.9e-76 288.1 184 82.1
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 4.9e-76 288.1 184 82.1
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-75 287.0 200 79.5
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 1.1e-75 287.0 200 79.5
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 9.3e-75 283.9 194 78.4
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 9.3e-75 283.9 194 78.4
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.2e-74 283.5 195 78.5
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 2.1e-74 282.7 195 77.9
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 2.1e-74 282.7 195 77.9
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.5e-74 282.0 204 75.5
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 5.1e-73 278.1 198 77.3
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 6.7e-73 277.7 207 72.9
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 1.9e-72 276.2 208 71.2
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.9e-72 276.2 208 71.2
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 2.5e-72 275.8 208 71.6
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 5.6e-72 274.6 208 72.6
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 7.4e-72 274.2 208 71.2
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 9.6e-72 273.9 201 76.1
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.3e-71 273.5 204 73.5
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.6e-71 273.1 208 70.7
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 2.1e-71 272.7 208 71.2
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.8e-71 271.6 208 70.7
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.2e-71 271.2 208 70.7
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 6.2e-71 271.2 208 70.7
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.8e-70 269.6 208 70.2
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.8e-70 269.6 195 75.9
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 2.4e-70 269.2 208 70.2
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 3.1e-70 268.9 208 70.7
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 3.1e-70 268.9 207 69.1
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.0e-70 268.5 208 70.2
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 5.3e-70 268.1 209 69.9
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 6.9e-70 267.7 208 70.2
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.2e-69 266.9 208 70.7
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.2e-69 266.9 209 69.9
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.5e-69 266.5 208 70.2
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.5e-69 266.5 208 67.8
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 4.5e-69 265.0 208 70.2
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 2.2e-68 262.7 211 69.2
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.8e-68 261.9 208 68.3
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 8.4e-68 260.8 208 70.2
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.4e-67 260.0 209 67.9
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 4.2e-67 258.5 208 70.2
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 9.3e-67 257.3 208 69.7
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 1.6e-66 256.5 208 69.2
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.6e-66 256.5 209 67.0
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 2.1e-66 256.1 208 68.8
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 3.5e-66 255.4 200 70.5
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 4.6e-66 255.0 207 69.6
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 4.6e-66 255.0 207 69.6
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 4.6e-66 255.0 205 69.8
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 6.0e-66 254.6 208 67.8
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 6.0e-66 254.6 207 71.0
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 7.9e-66 254.2 209 67.0
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 7.9e-66 254.2 208 67.3
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.0e-65 253.8 207 68.6
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 1.0e-65 253.8 208 66.8
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.3e-65 253.4 200 70.5
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.0e-65 252.3 208 67.8
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 5.1e-65 251.5 207 68.6
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 5.1e-65 251.5 208 68.8
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 8.7e-65 250.8 202 70.3
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 8.7e-65 250.8 208 68.3
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 8.7e-65 250.8 207 67.1
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.9e-64 249.6 208 67.8
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.5e-64 249.2 204 68.1
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 3.3e-64 248.8 206 64.1
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 5.7e-64 248.1 208 65.4
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 7.4e-64 247.7 207 67.1
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.3e-63 246.9 208 66.3
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.8e-63 245.7 203 69.0
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.8e-63 245.7 208 66.3
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 3.7e-63 245.4 206 66.5
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.7e-63 245.4 208 66.8
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 3.7e-63 245.4 208 67.3
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 4.8e-63 245.0 208 67.3
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 8.2e-63 244.2 203 68.0
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 8.2e-63 244.2 207 66.7
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.1e-62 242.3 208 65.9
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 5.3e-62 241.5 206 66.0
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 6.9e-62 241.1 207 66.7
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.0e-61 239.6 208 65.9
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 3.4e-61 238.8 207 64.3
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.3e-60 236.9 208 65.4
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.3e-60 236.9 204 66.2
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 1.7e-60 236.5 206 65.5
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.7e-60 236.5 207 65.7
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.8e-60 235.3 202 65.3
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 3.8e-60 235.3 209 65.1
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 3.8e-60 235.3 209 65.1
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 5.0e-60 235.0 207 65.7
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.9e-59 233.0 208 64.4
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.5e-59 232.6 208 64.4
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 5.5e-59 231.5 208 64.4
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 7.2e-59 231.1 192 67.2
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 7.2e-59 231.1 188 67.6
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 7.2e-59 231.1 208 62.5
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 9.4e-59 230.7 220 61.8
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.2e-58 230.3 192 66.1
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.6e-58 229.9 209 61.7
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 2.1e-58 229.6 209 61.7
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.4e-57 226.9 208 62.0
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 3.0e-57 225.7 206 63.1
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 6.7e-57 224.6 208 63.5
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 1.5e-56 223.4 208 60.6
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 2.5e-56 222.6 197 63.5
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.3e-55 220.3 197 62.4
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.8e-55 219.2 207 59.9
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.8e-54 216.5 211 58.3
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 4.1e-54 215.3 212 57.5
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 5.3e-54 214.9 208 59.1
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.0e-53 213.0 212 58.0
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 7.7e-53 211.1 206 57.8
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.8e-52 208.8 177 67.2
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.1e-51 207.2 208 55.3
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.1e-51 207.2 208 57.7
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 1.4e-51 206.8 214 56.1
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 5.5e-51 204.9 194 59.3
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 9.4e-51 204.1 208 55.8
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.0e-49 200.7 207 57.0
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 3.9e-49 198.7 218 53.7
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 8.8e-49 197.6 218 54.6
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.5e-45 186.8 144 68.1
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.1e-43 180.6 213 53.5
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 4.8e-39 165.2 116 74.1
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 2.9e-36 156.0 213 47.9
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.7e-31 140.2 104 76.9
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 2.8e-31 139.4 117 64.1
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.8e-25 120.2 138 52.2
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 9.1e-22 107.8 256 32.8
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.3e-20 103.2 158 44.3
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 8.6e-20 101.3 120 49.2
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 9.8e-16 87.8 85 58.8
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 1.7e-12 77.0 71 57.7
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 1.0e-09 67.8 64 54.7
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 4.0e-09 65.9 42 81.0
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 8.9e-09 64.7 176 30.7
AagrBONN_evm.TU.Sc2ySwM_228.4062 Anthoceros agrestis HOM05D034434 ORTHO05D002774 1.9e-06 57.0 89 28.1
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 1.9e-06 57.0 205 25.9
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 2.4e-06 56.6 89 29.2


User provided reference genes

Program Settings