Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 6.7e-168 594.0 307 100.0
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 1.9e-162 575.9 307 97.7
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 7.2e-162 573.9 307 97.1
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 1.4e-160 569.7 307 95.8
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 1.4e-160 569.7 307 96.7
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 1.8e-160 569.3 307 95.4
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 1.1e-159 566.6 307 95.1
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 2.0e-159 565.8 307 95.1
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 3.3e-159 565.1 307 94.8
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 4.4e-159 564.7 307 95.4
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 5.7e-159 564.3 307 94.8
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 1.7e-155 552.7 336 86.9
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 2.7e-148 528.9 307 88.6
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 2.7e-145 518.8 307 88.9
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 1.7e-139 499.6 321 83.8
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 3.8e-139 498.4 307 84.4
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 7.3e-122 441.0 307 72.3
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.2e-121 440.3 307 71.0
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 8.1e-121 437.6 277 80.1
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 1.1e-120 437.2 308 71.4
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 1.1e-120 437.2 312 73.1
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 1.4e-120 436.8 309 72.2
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 2.3e-120 436.0 309 72.2
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 4.0e-120 435.3 307 70.7
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 8.9e-120 434.1 307 71.0
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 2.0e-119 433.0 312 71.5
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 5.8e-119 431.4 307 71.3
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 2.9e-118 429.1 307 71.0
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 3.7e-118 428.7 312 70.8
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 6.4e-118 427.9 307 70.4
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 8.3e-118 427.6 312 71.2
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 1.9e-117 426.4 307 71.0
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 3.2e-117 425.6 307 71.3
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 7.1e-117 424.5 318 70.4
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 2.1e-116 422.9 335 66.0
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 2.1e-116 422.9 335 66.0
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 4.6e-116 421.8 307 70.4
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 7.8e-116 421.0 307 71.3
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 7.8e-116 421.0 307 69.7
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 1.0e-115 420.6 307 69.7
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.0e-115 420.6 307 70.4
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.0e-115 420.6 307 70.0
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 1.7e-115 419.9 307 70.0
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.7e-115 419.9 307 70.0
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 1.7e-115 419.9 307 69.7
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 3.0e-115 419.1 308 70.1
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 5.1e-115 418.3 307 69.4
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 5.1e-115 418.3 307 70.0
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 8.6e-115 417.5 308 69.5
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.1e-114 417.2 307 69.4
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 1.1e-114 417.2 308 69.2
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 1.5e-114 416.8 307 69.1
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 1.5e-114 416.8 308 68.8
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 1.9e-114 416.4 307 68.1
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 1.9e-114 416.4 307 68.1
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 3.3e-114 415.6 307 69.1
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 4.3e-114 415.2 308 69.2
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 5.6e-114 414.8 307 69.7
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 1.2e-113 413.7 307 69.1
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 2.8e-113 412.5 278 73.7
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 4.7e-113 411.8 307 68.7
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 6.2e-113 411.4 278 72.7
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 6.2e-113 411.4 308 68.2
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 3.1e-112 409.1 309 67.0
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 5.2e-112 408.3 309 68.6
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 5.2e-112 408.3 309 68.6
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 5.2e-112 408.3 270 73.7
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 6.8e-112 407.9 315 68.3
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 1.5e-111 406.8 308 66.2
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 1.5e-111 406.8 308 66.9
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 3.4e-111 405.6 309 68.3
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 2.2e-110 402.9 310 66.8
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 2.9e-110 402.5 279 72.0
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 2.9e-110 402.5 311 66.9
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 6.4e-110 401.4 311 66.9
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 8.4e-110 401.0 313 68.1
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 1.4e-109 400.2 305 65.9
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 4.1e-109 398.7 353 61.5
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 7.1e-109 397.9 271 72.0
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 9.2e-109 397.5 307 64.5
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 1.6e-108 396.7 311 66.6
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 1.6e-108 396.7 311 66.6
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 4.6e-108 395.2 307 65.5
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 1.1e-106 390.6 312 66.3
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 3.3e-106 389.0 312 67.0
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 4.3e-106 388.7 272 71.7
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 1.5e-103 380.2 307 64.2
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 4.4e-103 378.6 316 63.0
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 6.4e-102 374.8 326 63.5
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 1.0e-99 367.5 324 60.8
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 3.0e-99 365.9 307 61.6
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 3.3e-98 362.5 307 60.9
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 5.4e-93 345.1 325 59.1
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 1.6e-89 333.6 347 55.0
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 1.8e-88 330.1 321 54.5
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.6e-84 317.0 272 61.4
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.0e-83 314.3 232 68.1
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 2.3e-83 313.2 237 69.6
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 3.3e-82 309.3 304 54.3
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 9.6e-82 307.8 313 53.7
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 3.1e-80 302.8 233 67.0
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 2.1e-76 290.0 202 71.3
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 2.1e-68 263.5 261 56.3
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 1.9e-66 256.9 307 47.2
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 1.8e-64 250.4 209 63.6
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.1e-61 241.1 261 47.5
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 6.7e-59 231.9 287 43.6
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 3.4e-55 219.5 192 63.5
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 1.4e-48 197.6 317 38.8
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 9.4e-45 184.9 155 64.5
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 1.2e-42 177.9 301 36.5
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 5.5e-37 159.1 225 40.0
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 6.1e-36 155.6 247 36.4
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.8e-35 154.1 182 50.5
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 7.7e-31 138.7 116 59.5
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 8.0e-28 128.6 206 38.8
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.7e-25 120.9 88 68.2
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 3.6e-20 103.2 93 58.1
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 1.2e-18 98.2 74 64.9
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 4.6e-15 86.3 166 34.9
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 4.6e-15 86.3 78 59.0
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 4.9e-09 66.2 79 50.6


User provided reference genes

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