Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G24370 Arabidopsis lyrata HOM05D006426 ORTHO05D007737 2.2e-214 748.8 405 100.0
AT4G28230 Arabidopsis thaliana HOM05D006426 ORTHO05D007737 1.1e-194 683.3 407 93.6
Carub.0007s1253 Capsella rubella HOM05D006426 ORTHO05D007737 1.2e-183 646.7 413 87.7
CARHR235940 Cardamine hirsuta HOM05D006426 ORTHO05D007737 1.8e-176 622.9 423 84.9
Thhalv10025277m.g Eutrema salsugineum HOM05D006426 ORTHO05D007737 1.8e-168 596.3 433 80.8
Sp7g26190 Schrenkiella parvula HOM05D006426 ORTHO05D007737 2.5e-154 549.3 433 76.7
BcaNung01587 Brassica carinata HOM05D006426 ORTHO05D007737 1.6e-148 530.0 409 77.8
A01p19640 Brassica napus HOM05D006426 ORTHO05D007737 1.2e-143 513.8 412 76.7
BraA01t01897Z Brassica rapa HOM05D006426 ORTHO05D007737 2.5e-138 496.1 411 74.7
BolC1t02416H Brassica oleracea HOM05D006426 ORTHO05D007737 3.5e-132 475.7 410 72.4
C01p24670 Brassica napus HOM05D006426 ORTHO05D007737 7.8e-132 474.6 410 72.2
BcaC09g50504 Brassica carinata HOM05D006426 ORTHO05D007737 1.9e-130 469.9 412 71.4
Aa31LG2G22090 Aethionema arabicum HOM05D006426 ORTHO05D007737 2.6e-127 459.5 432 67.1
THA.LOC104804065 Tarenaya hassleriana HOM05D006426 ORTHO05D007737 1.9e-125 453.4 425 63.5
Thecc.02G171600 Theobroma cacao HOM05D006426 ORTHO05D007737 4.8e-97 359.0 464 51.3
Gohir.D02G183100 Gossypium hirsutum HOM05D006426 ORTHO05D007737 6.9e-96 355.1 457 51.6
COL.COLO4_13683 Corchorus olitorius HOM05D006426 ORTHO05D007737 9.1e-96 354.8 450 53.6
Gohir.A03G160000 Gossypium hirsutum HOM05D006426 ORTHO05D007737 1.5e-95 354.0 457 51.9
Gorai.005G205500 Gossypium raimondii HOM05D006426 ORTHO05D007737 7.7e-95 351.7 457 51.4
Duzib248G1395 Durio zibethinus HOM05D006426 ORTHO05D007737 2.0e-90 337.0 452 51.3
Duzib132G0414 Durio zibethinus HOM05D006426 ORTHO05D007737 1.2e-87 327.8 459 49.5
Cpa.g.sc34.90 Carica papaya HOM05D006426 ORTHO05D007737 3.3e-82 309.7 447 50.6
TWI75G1119 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 3.3e-82 309.7 447 47.2
Cfa014544 Carpinus fangiana HOM05D006426 ORTHO05D007737 8.2e-81 305.1 456 48.5
TWI18G0136 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 8.2e-81 305.1 444 47.3
TWI36G1326 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 8.2e-81 305.1 450 47.3
Haze_13087 Corylus avellana HOM05D006426 ORTHO05D007737 1.8e-80 303.9 460 47.8
Ciclev10015289m.g Citrus clementina HOM05D006426 ORTHO05D007737 1.0e-78 298.1 422 50.0
Potri.019G116200 Populus trichocarpa HOM05D006426 ORTHO05D007737 3.8e-78 296.2 434 49.1
Potri.013G147500 Populus trichocarpa HOM05D006426 ORTHO05D007737 8.5e-78 295.0 437 48.3
QL08p037311 Quercus lobata HOM05D006426 ORTHO05D007737 2.5e-77 293.5 467 47.1
Sabra13G0119100 Salix brachista HOM05D006426 ORTHO05D007737 1.2e-76 291.2 446 46.9
CiPaw.04G122700 Carya illinoinensis HOM05D006426 ORTHO05D007737 1.2e-74 284.6 456 46.3
Sabra19G0136500 Salix brachista HOM05D006426 ORTHO05D007737 2.0e-74 283.9 416 48.6
Sabra19G0117200 Salix brachista HOM05D006426 ORTHO05D007737 3.3e-74 283.1 416 48.6
Manes.13G151600 Manihot esculenta HOM05D006426 ORTHO05D007737 5.7e-74 282.3 450 47.1
FAN02G4384 Fragaria x ananassa HOM05D006426 ORTHO05D007737 1.0e-70 271.6 442 46.2
Prupe.3G231100 Prunus persica HOM05D006426 ORTHO05D007737 1.3e-70 271.2 460 46.1
Dinv15495 Davidia involucrata HOM05D006426 ORTHO05D007737 3.8e-70 269.6 477 44.2
MD17G1084500 Malus domestica HOM05D006426 ORTHO05D007737 5.0e-70 269.2 461 45.8
RcHm_v2.0_Chr2g0161781 Rosa chinensis HOM05D006426 ORTHO05D007737 1.5e-69 267.7 446 46.0
Hma1.2p1_0565F.1_g179550 Hydrangea macrophylla HOM05D006426 ORTHO05D007737 5.5e-69 265.8 455 44.4
Manes.12G083000 Manihot esculenta HOM05D006426 ORTHO05D007737 5.5e-69 265.8 448 44.2
Actinidia09902 Actinidia chinensis HOM05D006426 ORTHO05D007737 1.6e-68 264.2 449 43.7
PGSC0003DMG400018371 Solanum tuberosum HOM05D006426 ORTHO05D007737 2.1e-68 263.8 482 43.8
FAN14G1414 Fragaria x ananassa HOM05D006426 ORTHO05D007737 4.7e-68 262.7 441 45.1
FvH4_6g44570 Fragaria vesca HOM05D006426 ORTHO05D007737 8.0e-68 261.9 441 45.1
FAN09G0359 Fragaria x ananassa HOM05D006426 ORTHO05D007737 8.0e-68 261.9 443 45.1
MD09G1096400 Malus domestica HOM05D006426 ORTHO05D007737 1.0e-67 261.5 460 45.4
Solyc07g054690.1 Solanum lycopersicum HOM05D006426 ORTHO05D007737 1.8e-67 260.8 480 43.5
Sopen07g028590 Solanum pennellii HOM05D006426 ORTHO05D007737 3.0e-67 260.0 480 43.8
CAN.G508.22 Capsicum annuum HOM05D006426 ORTHO05D007737 5.2e-67 259.2 464 44.0
Actinidia12458 Actinidia chinensis HOM05D006426 ORTHO05D007737 2.6e-66 256.9 466 43.6
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 2.6e-66 256.9 468 42.5
PGR042G3565 Punica granatum HOM05D006426 ORTHO05D007737 7.5e-66 255.4 440 45.2
Cc05_g06260 Coffea canephora HOM05D006426 ORTHO05D007737 9.1e-64 248.4 493 40.8
Rhsim06G0152100 Rhododendron simsii HOM05D006426 ORTHO05D007737 1.3e-62 244.6 491 43.0
Nitab4.5_0001871g0070 Nicotiana tabacum HOM05D006426 ORTHO05D007737 1.7e-62 244.2 470 41.1
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 5.0e-62 242.7 443 41.5
MSTRG.14180 Avicennia marina HOM05D006426 ORTHO05D007737 6.6e-62 242.3 463 42.8
EL10Ac9g20938 Beta vulgaris HOM05D006426 ORTHO05D007737 1.1e-61 241.5 456 43.2
Oeu018075.1 Olea europaea HOM05D006426 ORTHO05D007737 2.5e-61 240.4 473 41.0
DCAR_009725 Daucus carota HOM05D006426 ORTHO05D007737 4.0e-59 233.0 447 42.7
Peaxi162Scf00007g00272 Petunia axillaris HOM05D006426 ORTHO05D007737 8.9e-59 231.9 476 40.5
Eucgr.A01776 Eucalyptus grandis HOM05D006426 ORTHO05D007737 1.5e-58 231.1 402 46.3
Nitab4.5_0002370g0070 Nicotiana tabacum HOM05D006426 ORTHO05D007737 1.5e-58 231.1 483 40.0
Sed0007067 Sechium edule HOM05D006426 ORTHO05D007737 5.7e-58 229.2 436 42.2
TAR627G1051 Trochodendron aralioides HOM05D006426 ORTHO05D007737 9.8e-58 228.4 459 41.2
Oeu025481.1 Olea europaea HOM05D006426 ORTHO05D007737 1.7e-57 227.6 491 39.3
ClCG02G017320 Citrullus lanatus HOM05D006426 ORTHO05D007737 2.8e-57 226.9 461 39.3
Migut.H01020 Erythranthe guttata HOM05D006426 ORTHO05D007737 1.8e-56 224.2 459 39.9
MELO3C013535.2 Cucumis melo HOM05D006426 ORTHO05D007737 9.2e-56 221.9 462 38.3
Nn1g03877 Nelumbo nucifera HOM05D006426 ORTHO05D007737 1.2e-55 221.5 460 40.4
CsaV3_6G012420 Cucumis sativus L. HOM05D006426 ORTHO05D007737 3.8e-54 216.5 462 39.0
Atru.chr6.3076 Acer truncatum HOM05D006426 ORTHO05D007737 3.3e-53 213.4 310 48.1
TAR626G1919 Trochodendron aralioides HOM05D006426 ORTHO05D007737 7.3e-53 212.2 426 39.0
arahy.Tifrunner.gnm1.ann1.2866YZ Arachis hypogaea HOM05D006426 ORTHO05D007737 2.8e-52 210.3 423 40.2
Lj8P117T60 Lonicera japonica HOM05D006426 ORTHO05D007737 8.0e-52 208.8 327 45.9
arahy.Tifrunner.gnm1.ann1.512YGT Arachis hypogaea HOM05D006426 ORTHO05D007737 2.3e-51 207.2 423 39.0
Sc06g0009150 Simmondsia chinensis HOM05D006426 ORTHO05D007737 7.5e-50 202.2 455 38.0
TAR629G2656 Trochodendron aralioides HOM05D006426 ORTHO05D007737 7.5e-50 202.2 424 38.4
SGA_v2.0_scaffold49G18304 Striga asiatica HOM05D006426 ORTHO05D007737 9.2e-48 195.3 477 36.3
MBI18_g45419_MAGBIO Magnolia biondii HOM05D006426 ORTHO05D007737 3.5e-47 193.4 463 37.4
SalBow1G4632 Salvia bowleyana HOM05D006426 ORTHO05D007737 1.9e-45 187.6 450 38.0
unitig_52.g17339 Utricularia gibba HOM05D006426 ORTHO05D007737 1.4e-43 181.4 437 37.8
Lj3g0000273 Lotus japonicus HOM05D006426 ORTHO05D007737 7.5e-42 175.6 436 38.1
Aqoxy1G03895 Aquilegia oxysepala HOM05D006426 ORTHO05D007737 3.2e-40 170.2 510 33.1
Lsat_1_v5_gn_4_69460 Lactuca sativa HOM05D006426 ORTHO05D007737 9.2e-40 168.7 461 37.3
VMungo1080G0900 Vigna mungo HOM05D006426 ORTHO05D007737 7.8e-39 165.6 411 38.4
PSO832G1174 Papaver somniferum HOM05D006426 ORTHO05D007737 3.0e-38 163.7 433 37.6
Phvul.005G017100 Phaseolus vulgaris HOM05D006426 ORTHO05D007737 3.9e-38 163.3 407 37.8
Lalb_Chr01g0017281 Lupinus albus HOM05D006426 ORTHO05D007737 8.6e-38 162.2 368 38.0
DCAR_012977 Daucus carota HOM05D006426 ORTHO05D007737 1.1e-37 161.8 388 35.6
ECA232G2383 Erigeron canadensis HOM05D006426 ORTHO05D007737 2.5e-37 160.6 450 35.6
Glyma.11G158800 Glycine max HOM05D006426 ORTHO05D007737 2.5e-37 160.6 411 36.0
Glyma.04G132700 Glycine max HOM05D006426 ORTHO05D007737 1.2e-36 158.3 407 35.9
HanXRQChr15g0488091 Helianthus annuus HOM05D006426 ORTHO05D007737 1.2e-36 158.3 409 39.1
PSO210G4394 Papaver somniferum HOM05D006426 ORTHO05D007737 6.2e-36 156.0 452 35.2
PSO675G8522 Papaver somniferum HOM05D006426 ORTHO05D007737 4.9e-33 146.4 492 35.8
SGA_v2.0_scaffold159G37625 Striga asiatica HOM05D006426 ORTHO05D007737 1.2e-31 141.7 401 32.2
Sed0009175 Sechium edule HOM05D006426 ORTHO05D007737 1.6e-31 141.4 342 36.5
PSO541G1576 Papaver somniferum HOM05D006426 ORTHO05D007737 1.3e-30 138.3 493 35.3
Psat5g223040 Pisum sativum HOM05D006426 ORTHO05D007737 2.1e-28 131.0 440 33.9
Medtr3g013540 Medicago truncatula HOM05D006426 ORTHO05D007737 3.1e-27 127.1 415 34.5
TPR.G1458 Trifolium pratense HOM05D006426 ORTHO05D007737 2.3e-22 110.9 446 32.1
ATR0693G210 Amborella trichopoda HOM05D006426 ORTHO05D007737 3.9e-22 110.2 493 30.0
Ca_18074_v3 Cicer arietinum L. HOM05D006426 ORTHO05D007737 1.6e-20 104.8 419 31.3
GSVIVG01030006001 Vitis vinifera HOM05D006426 ORTHO05D007737 2.0e-18 97.8 146 48.6
HPP92_011122 Vanilla planifolia HOM05D006426 ORTHO05D007737 9.3e-16 89.0 382 32.7
HPP92_011117 Vanilla planifolia HOM05D006426 ORTHO05D007737 4.6e-15 86.7 433 30.9
Lj1P736T39 Lonicera japonica HOM05D006426 ORTHO05D007737 1.7e-14 84.7 171 42.7
CDE10G0475 Ceratophyllum demersum HOM05D006426 ORTHO05D007737 8.1e-12 75.9 438 27.2
FvH4_6g44594 Fragaria vesca HOM05D006426 ORTHO05D007737 2.6e-10 70.9 162 37.7
unitig_62.g23190 Utricularia gibba HOM05D006426 ORTHO05D007737 2.9e-09 67.4 150 39.3
Oeu029930.1 Olea europaea HOM05D006426 ORTHO05D007737 1.2e-07 62.0 130 42.3
Oeu035359.1 Olea europaea HOM05D006426 ORTHO05D007737 2.1e-07 61.2 130 42.3
SGA_v2.0_scaffold51G18895 Striga asiatica HOM05D001803 ORTHO05D001686 6.0e-07 59.7 152 34.2
Oeu003230.1 Olea europaea HOM05D006426 ORTHO05D007737 2.3e-06 57.8 130 42.3


User provided reference genes

Program Settings