Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 2.1e-307 1058.1 518 100.0
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 3.0e-293 1011.1 518 95.6
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.4e-279 965.7 521 90.6
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 2.1e-254 882.1 522 83.9
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 2.7e-254 881.7 522 84.3
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 5.3e-242 840.9 519 81.3
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 9.1e-242 840.1 519 81.3
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 5.0e-240 834.3 524 80.9
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.0e-237 826.6 520 79.8
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.7e-235 819.3 520 79.6
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 6.5e-232 807.4 518 78.0
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 4.2e-231 804.7 523 78.2
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 5.5e-231 804.3 521 77.4
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 2.1e-230 802.4 521 77.5
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 3.6e-230 801.6 521 77.5
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 3.0e-229 798.5 522 77.0
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 6.4e-211 737.6 524 70.2
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 5.0e-200 701.4 525 67.4
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.1e-173 614.0 406 76.1
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 2.7e-153 546.2 536 52.8
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 6.7e-152 541.6 533 52.5
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 9.0e-149 531.2 542 50.6
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 2.6e-148 529.6 523 51.6
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.9e-147 526.2 523 51.4
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.9e-147 526.2 523 51.4
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.0e-147 525.4 519 51.6
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 4.2e-146 522.3 523 51.6
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 3.0e-144 516.2 524 51.7
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.1e-143 514.2 559 50.1
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.1e-143 514.2 559 50.1
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 2.5e-143 513.1 523 50.3
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 4.3e-143 512.3 521 50.7
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 1.6e-142 510.4 527 50.5
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 3.7e-142 509.2 527 49.3
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 3.7e-142 509.2 542 48.7
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 8.2e-142 508.1 561 48.8
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 3.1e-141 506.1 522 49.2
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 6.9e-141 505.0 534 48.1
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 5.9e-140 501.9 534 49.3
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 7.7e-140 501.5 521 48.4
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.3e-139 500.7 530 49.2
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.4e-138 497.3 524 49.8
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.9e-138 496.9 559 47.9
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.9e-138 496.9 542 48.2
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 3.2e-138 496.1 531 50.5
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 9.4e-138 494.6 534 47.6
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 1.6e-137 493.8 518 50.2
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 4.6e-137 492.3 528 49.1
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 1.0e-136 491.1 545 49.0
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 8.8e-136 488.0 521 48.2
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-135 487.6 556 48.2
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 2.0e-135 486.9 529 49.7
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 2.6e-135 486.5 542 49.4
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 5.7e-135 485.3 530 47.9
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 9.7e-135 484.6 521 51.1
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.7e-134 483.8 536 48.9
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.8e-133 480.3 544 46.0
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 5.3e-133 478.8 530 49.2
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 5.3e-133 478.8 517 48.4
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 5.3e-133 478.8 551 47.0
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 9.1e-133 478.0 519 48.0
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.5e-132 477.2 530 49.1
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 4.5e-132 475.7 520 47.3
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.0e-131 474.6 528 46.8
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.8e-131 472.6 545 44.4
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 5.0e-131 472.2 552 47.3
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 1.4e-130 470.7 510 49.4
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 4.2e-130 469.2 541 46.6
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 9.4e-130 468.0 521 46.6
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.1e-129 466.8 523 46.5
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 3.6e-129 466.1 542 45.8
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 4.7e-129 465.7 527 47.1
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 7.9e-129 464.9 561 47.1
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.3e-128 463.4 518 48.6
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 3.9e-128 462.6 519 46.2
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 5.2e-128 462.2 520 46.3
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 8.8e-128 461.5 520 46.3
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 2.0e-127 460.3 528 45.6
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 7.4e-127 458.4 536 46.1
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.3e-126 457.6 526 45.4
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 2.2e-126 456.8 516 45.3
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 4.1e-125 452.6 520 46.0
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.2e-124 451.1 526 45.8
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.6e-124 449.9 521 47.8
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 3.5e-124 449.5 519 45.9
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 7.7e-124 448.4 565 43.9
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.3e-123 447.6 555 45.6
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 2.9e-123 446.4 523 46.3
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 7.2e-122 441.8 481 47.4
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 2.1e-121 440.3 530 44.7
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 8.0e-121 438.3 537 44.7
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 3.0e-120 436.4 514 44.7
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 5.2e-120 435.6 511 44.2
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.6e-116 424.1 542 43.7
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.0e-115 421.4 503 46.9
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.1e-114 417.9 508 42.3
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 3.2e-114 416.4 531 43.7
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 1.4e-112 411.0 520 42.5
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 6.8e-112 408.7 518 44.4
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 2.2e-110 403.7 524 42.0
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 4.8e-110 402.5 558 40.1
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.9e-107 393.3 469 47.8
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 3.6e-105 386.3 474 43.5
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.4e-104 384.4 521 41.8
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.4e-103 379.8 522 41.8
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 9.2e-101 371.7 527 40.0
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-99 367.1 499 41.3
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 6.6e-99 365.5 532 38.3
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 2.1e-97 360.5 527 39.1
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 2.8e-97 360.1 525 38.9
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.2e-95 354.8 538 40.0
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 5.7e-95 352.4 534 39.9
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 2.3e-91 340.5 507 38.1
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 2.5e-90 337.0 540 37.4
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.1e-88 331.6 525 37.0
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 2.0e-87 327.4 515 39.2
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-86 323.9 498 38.8
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.5e-82 311.2 518 35.9
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 5.2e-80 302.8 482 38.6
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 4.9e-78 296.2 554 35.0
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-71 273.9 471 35.2
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.4e-71 273.5 471 35.2
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.9e-70 269.6 514 33.7
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.4e-70 268.9 514 33.9
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.2e-69 265.4 521 33.4
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.6e-55 219.2 463 31.3
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.6e-55 219.2 463 31.3
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.3e-51 208.4 519 29.1
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.2e-44 185.3 259 39.8
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-43 182.2 386 31.3
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.8e-40 171.4 501 27.7
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.3e-38 165.2 490 27.3
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.9e-37 161.4 318 33.6
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.1e-36 157.9 465 27.3
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.5e-36 157.1 496 27.2
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 6.0e-36 156.4 171 43.9
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.0e-35 154.1 149 51.0
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.2e-31 142.1 147 44.9
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.0e-31 141.4 414 27.5
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 1.9e-29 134.8 448 25.7
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 3.7e-25 120.6 492 24.6
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 4.4e-18 97.1 509 23.8
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 2.2e-17 94.7 72 55.6
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.8e-17 93.6 389 24.9
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.5e-14 82.8 295 28.1
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 1.4e-11 75.5 90 36.7
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 8.8e-11 72.8 121 32.2
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 4.4e-10 70.5 112 34.8
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 9.7e-10 69.3 70 42.9
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 1.3e-09 68.9 92 38.0
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 3.7e-09 67.4 61 50.8
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-08 65.5 82 42.7
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 5.3e-08 63.5 57 49.1
BcaC07g38319 Brassica carinata HOM05D001805 ORTHO05D001734 1.2e-07 62.4 38 78.9
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.6e-07 62.0 134 31.3


User provided reference genes

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