Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 4.0e-95 351.7 209 100.0
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.5e-78 296.6 209 78.9
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 1.4e-71 273.5 209 71.8
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 1.8e-71 273.1 210 83.8
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 2.2e-69 266.2 209 68.4
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 2.7e-67 259.2 212 67.5
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 8.6e-66 254.2 213 68.1
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 4.3e-65 251.9 210 68.6
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 5.6e-65 251.5 210 71.4
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 5.6e-65 251.5 210 71.4
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 1.8e-63 246.5 210 70.0
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 9.8e-62 240.7 214 68.2
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.0e-58 230.7 205 63.9
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 3.3e-57 225.7 207 62.3
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.7e-53 213.4 209 60.3
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 2.2e-53 213.0 209 59.8
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 1.9e-52 209.9 209 60.8
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 4.1e-52 208.8 209 61.2
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 1.6e-51 206.8 209 60.8
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 2.1e-51 206.5 207 56.5
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 2.8e-48 196.1 204 59.3
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 2.8e-48 196.1 204 59.3
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 2.4e-47 193.0 204 59.8
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 2.4e-47 193.0 204 59.8
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 2.0e-46 189.9 204 60.3
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 1.2e-43 180.6 190 59.5
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 7.8e-35 151.4 203 50.2
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 2.4e-31 139.8 210 44.3
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 7.6e-30 134.8 225 49.8
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 4.9e-29 132.1 219 41.1
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.4e-29 131.7 231 39.4
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.4e-29 131.7 231 39.4
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 8.4e-29 131.3 226 41.6
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 8.4e-29 131.3 161 42.9
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 1.4e-28 130.6 234 39.3
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.4e-28 130.6 209 42.6
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.9e-28 130.2 208 42.8
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 4.2e-28 129.0 187 46.5
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 4.2e-28 129.0 234 38.9
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 1.2e-27 127.5 219 40.2
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.2e-27 127.5 207 42.5
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 3.5e-27 125.9 231 39.8
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 4.6e-27 125.6 219 44.3
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.0e-27 125.2 235 38.7
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 1.0e-26 124.4 208 47.1
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 1.0e-26 124.4 219 43.4
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.8e-26 123.6 228 44.3
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 2.3e-26 123.2 228 47.8
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 3.0e-26 122.9 246 38.2
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 3.0e-26 122.9 219 50.7
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 5.1e-26 122.1 219 39.3
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 6.7e-26 121.7 91 59.3
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 6.7e-26 121.7 225 42.7
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 8.7e-26 121.3 205 42.4
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 8.7e-26 121.3 227 41.9
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 8.7e-26 121.3 230 45.2
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.5e-25 120.6 85 63.5
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 1.5e-25 120.6 225 38.7
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.5e-25 120.6 227 47.1
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.9e-25 120.2 85 62.4
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.5e-25 119.8 225 43.1
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 3.3e-25 119.4 152 53.9
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 5.6e-25 118.6 235 40.0
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 5.6e-25 118.6 78 69.2
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 7.4e-25 118.2 77 68.8
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 7.4e-25 118.2 209 40.2
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 7.4e-25 118.2 191 46.1
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 7.4e-25 118.2 212 40.6
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 9.6e-25 117.9 91 61.5
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 9.6e-25 117.9 213 39.0
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 1.3e-24 117.5 234 42.3
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 2.1e-24 116.7 217 43.8
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 2.8e-24 116.3 166 40.4
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 3.7e-24 115.9 191 42.9
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 4.8e-24 115.5 208 38.5
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 8.1e-24 114.8 206 42.2
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 8.1e-24 114.8 253 42.3
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 1.1e-23 114.4 85 61.2
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.1e-23 114.4 227 41.4
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 1.4e-23 114.0 259 39.0
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 1.4e-23 114.0 215 38.1
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 1.4e-23 114.0 82 63.4
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 1.8e-23 113.6 95 56.8
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 2.4e-23 113.2 259 39.8
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 3.1e-23 112.8 218 37.6
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 4.0e-23 112.5 196 40.3
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 4.0e-23 112.5 77 70.1
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 4.0e-23 112.5 228 38.2
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 5.3e-23 112.1 216 41.2
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 9.0e-23 111.3 85 57.6
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 9.0e-23 111.3 201 38.3
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.2e-22 110.9 252 36.1
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.2e-22 110.9 228 45.2
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.5e-22 110.5 236 42.4
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.0e-22 110.2 266 35.0
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.0e-22 110.2 200 43.0
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 2.6e-22 109.8 77 63.6
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 2.6e-22 109.8 223 43.0
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 3.4e-22 109.4 231 41.6
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 4.5e-22 109.0 226 41.2
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.5e-22 109.0 212 40.1
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 4.5e-22 109.0 200 47.5
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 4.5e-22 109.0 82 63.4
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 5.8e-22 108.6 210 42.4
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 7.6e-22 108.2 227 37.0
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.0e-21 107.8 210 45.7
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.3e-21 107.5 194 38.7
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 1.3e-21 107.5 76 63.2
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.7e-21 107.1 223 45.7
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 3.8e-21 105.9 235 38.7
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 3.8e-21 105.9 91 61.5
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 3.8e-21 105.9 85 58.8
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 4.9e-21 105.5 211 37.0
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 6.5e-21 105.1 220 41.4
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 8.4e-21 104.8 72 63.9
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 8.4e-21 104.8 79 60.8
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 8.4e-21 104.8 199 40.2
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 1.1e-20 104.4 224 36.2
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.1e-20 104.4 227 39.6
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 1.1e-20 104.4 205 39.0
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 2.5e-20 103.2 169 47.9
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 1.2e-19 100.9 84 56.0
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.6e-19 100.5 188 39.9
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 2.1e-19 100.1 77 61.0
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.1e-19 100.1 203 39.4
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.7e-19 99.8 220 36.8
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.5e-19 99.4 215 33.5
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 6.0e-19 98.6 232 39.7
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 6.0e-19 98.6 84 57.1
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 6.0e-19 98.6 84 54.8
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 6.0e-19 98.6 222 45.0
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 1.3e-18 97.4 91 49.5
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.3e-18 96.7 150 51.3
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 3.0e-18 96.3 77 57.1
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.9e-18 95.9 189 36.0
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 5.1e-18 95.5 77 53.2
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 3.3e-17 92.8 113 54.0
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 9.6e-17 91.3 75 52.0
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 1.3e-13 80.9 80 50.0
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.7e-13 80.5 100 51.0
BolC3t18785H Brassica oleracea HOM05D004801 ORTHO05D004735 1.7e-13 80.5 100 51.0
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.2e-13 80.1 76 51.3
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 3.8e-13 79.3 86 47.7
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 9.3e-12 74.7 100 49.0
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 3.3e-09 66.2 44 72.7
BcaC03g17563 Brassica carinata HOM05D000889 ORTHO05D027509 1.3e-08 64.3 81 49.4
BolC2t11588H Brassica oleracea HOM05D004801 ORTHO05D005747 2.8e-08 63.2 84 56.0
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.4e-07 60.8 189 33.9
BolC7t44010H Brassica oleracea HOM05D000067 ORTHO05D000280 1.8e-07 60.5 40 75.0
A01p19730 Brassica napus HOM05D004801 ORTHO05D005747 4.1e-07 59.3 89 50.6
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 1.2e-06 57.8 165 32.1
BcaC02g09253 Brassica carinata HOM05D035837 ORTHO05D032574 5.9e-06 55.5 86 50.0


User provided reference genes

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