Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 6.3e-77 290.8 159 100.0
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 3.1e-76 288.5 159 99.4
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 7.0e-76 287.3 159 98.1
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 2.5e-73 278.9 159 96.2
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 3.2e-73 278.5 159 94.3
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 9.4e-73 276.9 159 95.0
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 6.8e-71 270.8 159 92.5
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 3.4e-70 268.5 158 92.4
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 7.5e-70 267.3 159 91.2
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 7.5e-70 267.3 159 91.2
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 1.7e-69 266.2 159 90.6
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 1.7e-69 266.2 159 90.6
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 5.2e-63 244.6 151 89.4
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 5.2e-63 244.6 151 89.4
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 9.8e-62 240.4 148 88.5
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 5.9e-59 231.1 159 79.2
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 1.3e-50 203.4 149 75.2
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 1.3e-50 203.4 149 75.2
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 2.0e-46 189.5 150 73.3
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 2.7e-43 179.1 139 69.8
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 7.8e-43 177.6 157 59.2
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 2.3e-42 176.0 149 63.8
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 3.9e-42 175.3 160 58.1
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 3.9e-42 175.3 163 60.1
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 5.0e-42 174.9 145 62.1
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 6.6e-42 174.5 140 67.1
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 6.6e-42 174.5 154 61.0
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 6.6e-42 174.5 151 62.9
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 1.1e-41 173.7 141 66.0
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.5e-41 173.3 154 60.4
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 1.9e-41 172.9 149 70.5
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 4.3e-41 171.8 155 57.4
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 5.6e-41 171.4 143 62.2
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 7.3e-41 171.0 141 63.1
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 7.3e-41 171.0 150 60.7
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 7.3e-41 171.0 151 59.6
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 9.5e-41 170.6 142 62.7
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 9.5e-41 170.6 142 62.7
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 9.5e-41 170.6 142 62.7
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 9.5e-41 170.6 141 62.4
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 1.2e-40 170.2 142 62.7
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 1.2e-40 170.2 142 62.7
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.2e-40 170.2 141 62.4
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 1.6e-40 169.9 141 62.4
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.6e-40 169.9 141 62.4
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 2.1e-40 169.5 163 57.1
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 2.8e-40 169.1 143 61.5
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 2.8e-40 169.1 143 61.5
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 4.7e-40 168.3 160 58.1
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 6.2e-40 167.9 147 60.5
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 6.2e-40 167.9 165 55.8
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 1.4e-39 166.8 146 61.0
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 1.8e-39 166.4 169 55.0
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 1.8e-39 166.4 148 60.1
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 1.8e-39 166.4 157 58.6
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.8e-39 166.4 144 61.8
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 1.8e-39 166.4 144 61.8
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 1.8e-39 166.4 146 61.0
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 3.1e-39 165.6 141 61.7
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 4.0e-39 165.2 144 61.1
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 5.2e-39 164.9 156 57.7
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 5.2e-39 164.9 156 57.7
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 6.8e-39 164.5 169 54.4
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 6.8e-39 164.5 139 62.6
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 1.2e-38 163.7 147 59.2
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.2e-38 163.7 147 59.2
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.2e-38 163.7 147 59.2
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.2e-38 163.7 149 58.4
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 1.2e-38 163.7 147 59.9
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 1.5e-38 163.3 146 60.3
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 2.6e-38 162.5 146 60.3
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 2.6e-38 162.5 146 60.3
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 2.6e-38 162.5 146 60.3
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 3.4e-38 162.2 141 59.6
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 3.4e-38 162.2 152 59.9
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 4.4e-38 161.8 158 57.0
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 5.8e-38 161.4 171 53.8
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 7.5e-38 161.0 158 55.7
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 7.5e-38 161.0 141 61.0
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 7.5e-38 161.0 154 58.4
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 1.7e-37 159.8 139 63.3
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 1.7e-37 159.8 158 57.0
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 2.2e-37 159.5 148 58.8
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.2e-37 159.5 161 56.5
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 8.3e-37 157.5 145 57.9
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 1.1e-36 157.1 142 57.7
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 1.1e-36 157.1 140 59.3
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.4e-36 156.0 144 57.6
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 2.4e-36 156.0 142 58.5
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.4e-36 156.0 151 52.3
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 4.1e-36 155.2 160 54.4
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 5.4e-36 154.8 149 57.7
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.6e-35 153.3 136 58.8
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 2.1e-35 152.9 146 57.5
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 2.7e-35 152.5 135 58.5
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 2.7e-35 152.5 136 61.8
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 2.7e-35 152.5 139 60.4
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 3.5e-35 152.1 155 53.5
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 6.0e-35 151.4 133 60.2
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 7.8e-35 151.0 154 53.9
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 1.0e-34 150.6 149 52.3
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 1.3e-34 150.2 143 56.6
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 1.3e-34 150.2 164 51.2
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.3e-34 150.2 158 52.5
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 1.7e-34 149.8 158 52.5
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 2.3e-34 149.4 151 53.6
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 2.3e-34 149.4 138 55.1
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 3.0e-34 149.1 155 54.2
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 3.9e-34 148.7 148 54.7
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 3.9e-34 148.7 148 54.7
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 6.6e-34 147.9 146 52.7
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 6.6e-34 147.9 130 59.2
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 8.6e-34 147.5 137 57.7
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 1.1e-33 147.1 159 52.2
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 7.3e-33 144.4 154 53.2
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.5e-33 144.1 133 57.1
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 9.5e-33 144.1 143 53.8
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 3.6e-32 142.1 141 56.0
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 4.7e-32 141.7 141 53.9
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 4.7e-32 141.7 139 55.4
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 1.4e-31 140.2 155 50.3
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 2.3e-31 139.4 135 54.8
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 3.1e-31 139.0 129 56.6
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 4.0e-31 138.7 135 55.6
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 5.2e-31 138.3 147 52.4
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 6.8e-31 137.9 130 55.4
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 1.5e-30 136.7 140 53.6
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.4e-30 135.6 126 57.9
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 1.7e-29 133.3 134 52.2
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 2.9e-29 132.5 153 48.4
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 2.9e-29 132.5 122 60.7
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 3.7e-29 132.1 146 50.0
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 6.4e-29 131.3 144 49.3
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 7.1e-28 127.9 123 56.9
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.7e-26 123.2 157 48.4
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 1.7e-26 123.2 137 52.6
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 5.1e-26 121.7 139 48.9
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 5.1e-26 121.7 145 51.0
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 1.1e-25 120.6 137 56.2
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 1.5e-25 120.2 152 47.4
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 2.5e-25 119.4 119 52.9
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 2.1e-24 116.3 124 54.0
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.4e-23 113.6 113 55.8
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 2.4e-23 112.8 99 61.6
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 5.2e-23 111.7 164 45.1
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 5.2e-23 111.7 136 50.7
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 2.0e-22 109.8 150 45.3
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 9.9e-22 107.5 133 48.9
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 1.3e-21 107.1 118 50.8
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.3e-21 107.1 139 46.0
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 2.2e-21 106.3 90 62.2
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 4.9e-21 105.1 89 60.7
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 8.4e-21 104.4 90 61.1
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 4.6e-19 98.6 88 60.2
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 1.3e-18 97.1 128 48.4
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 1.5e-17 93.6 92 55.4
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 1.9e-17 93.2 119 46.2
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 4.3e-17 92.0 129 45.7
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 1.6e-16 90.1 115 44.3
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 4.4e-14 82.0 122 42.6
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 7.1e-12 74.7 124 43.5
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 2.7e-11 72.8 75 53.3
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 1.0e-10 70.9 69 53.6
Nn4g24929 Nelumbo nucifera HOM05D003772 ORTHO05D004509 4.3e-09 65.5 101 41.6
Aqoxy4G00788 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 1.8e-07 60.1 137 29.2
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 1.8e-07 60.1 76 43.4
Nn2g13184 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.2e-06 57.4 56 53.6
CsaV3_6G012890 Cucumis sativus L. HOM05D003772 ORTHO05D004509 1.5e-06 57.0 112 39.3
Zm00001eb090900 Zea mays HOM05D003772 ORTHO05D004509 1.5e-06 57.0 68 48.5
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 2.6e-06 56.2 84 39.3
Rhsim06G0141600 Rhododendron simsii HOM05D003772 ORTHO05D004509 2.6e-06 56.2 51 52.9
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 2.6e-06 56.2 86 39.5
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 3.4e-06 55.8 96 32.3
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 3.4e-06 55.8 72 45.8
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 3.4e-06 55.8 91 40.7
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 4.5e-06 55.5 96 32.3
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 7.6e-06 54.7 128 29.7
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 9.9e-06 54.3 132 32.6


User provided reference genes

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