Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 8.5e-114 413.7 209 100.0
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 1.1e-110 403.3 209 97.1
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 2.0e-110 402.5 209 97.6
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 6.3e-109 397.5 209 94.7
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 6.3e-109 397.5 209 94.7
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 6.3e-109 397.5 209 95.2
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 1.1e-108 396.7 209 95.2
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 1.1e-108 396.7 209 95.2
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.1e-108 396.7 209 94.3
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 3.1e-108 395.2 209 93.8
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 7.0e-108 394.0 209 94.7
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.5e-107 392.9 208 94.2
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 2.0e-107 392.5 209 93.8
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.0e-106 390.2 209 95.2
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 1.3e-106 389.8 206 93.7
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 3.8e-106 388.3 207 94.7
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 3.2e-105 385.2 206 93.2
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.1e-97 360.1 205 86.8
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 4.1e-92 341.7 208 78.4
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 7.0e-92 340.9 209 78.9
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 2.0e-91 339.3 206 80.6
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 3.5e-91 338.6 208 77.9
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 2.9e-90 335.5 206 79.1
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 6.5e-90 334.3 208 77.4
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 8.5e-90 334.0 207 76.8
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 8.5e-90 334.0 206 79.1
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.9e-89 332.8 209 76.6
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 1.9e-89 332.8 205 77.6
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 2.5e-89 332.4 209 82.3
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 4.2e-89 331.6 208 77.9
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 4.2e-89 331.6 208 77.9
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 5.5e-89 331.3 206 77.2
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 5.5e-89 331.3 208 77.4
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 7.2e-89 330.9 208 77.9
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 9.4e-89 330.5 208 76.9
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 1.2e-88 330.1 206 76.7
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 1.6e-88 329.7 207 76.3
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.1e-88 329.3 206 77.7
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 2.1e-88 329.3 208 76.4
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 2.1e-88 329.3 205 75.6
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 2.7e-88 328.9 205 78.0
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 2.7e-88 328.9 205 78.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 4.7e-88 328.2 205 76.6
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 4.7e-88 328.2 205 79.0
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 4.7e-88 328.2 206 76.2
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 6.1e-88 327.8 208 75.0
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 6.1e-88 327.8 207 77.3
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 6.1e-88 327.8 206 75.2
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 6.1e-88 327.8 205 77.1
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 8.0e-88 327.4 206 77.2
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.0e-87 327.0 205 76.6
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.4e-87 326.6 206 76.2
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 2.3e-87 325.9 209 74.6
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 2.3e-87 325.9 207 76.8
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 3.0e-87 325.5 211 76.8
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 4.0e-87 325.1 205 76.1
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 4.0e-87 325.1 205 76.1
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 4.0e-87 325.1 206 74.8
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 8.8e-87 323.9 208 74.5
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.2e-86 323.6 206 76.2
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.2e-86 323.6 207 74.4
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.5e-86 323.2 206 75.7
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.5e-86 323.2 206 74.3
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.5e-86 323.2 207 75.4
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 2.0e-86 322.8 208 75.5
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 2.0e-86 322.8 208 74.5
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 2.0e-86 322.8 207 75.4
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 2.0e-86 322.8 205 75.1
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.6e-86 322.4 207 74.4
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 3.4e-86 322.0 205 74.6
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 9.8e-86 320.5 206 76.2
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.7e-85 319.7 206 75.2
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.7e-85 319.7 211 73.9
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 6.3e-85 317.8 206 74.8
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 8.3e-85 317.4 205 76.1
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.1e-84 317.0 206 74.3
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.1e-84 317.0 206 74.3
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 1.8e-84 316.2 208 73.6
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.8e-84 316.2 227 69.6
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.4e-84 315.8 207 73.9
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 5.4e-84 314.7 205 73.2
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 5.4e-84 314.7 205 74.6
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 4.5e-83 311.6 215 71.2
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 4.5e-83 311.6 205 76.1
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 7.7e-83 310.8 205 73.2
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 5.0e-82 308.1 203 72.9
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 3.3e-81 305.4 210 71.0
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 5.5e-81 304.7 209 71.8
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 2.1e-80 302.8 203 72.9
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 3.6e-80 302.0 189 75.7
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 1.8e-79 299.7 208 69.7
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 3.1e-76 288.9 203 69.0
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 4.1e-76 288.5 205 67.3
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 9.2e-76 287.3 207 68.6
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 2.0e-75 286.2 178 78.1
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 4.5e-75 285.0 208 70.2
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 5.9e-75 284.6 203 67.5
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 2.9e-74 282.3 213 64.3
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 3.9e-74 282.0 203 67.0
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 4.3e-73 278.5 208 68.3
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.4e-68 263.5 170 74.7
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.3e-65 252.3 166 71.7
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.2e-64 250.4 170 70.6
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.8e-63 246.5 189 66.1
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.5e-62 243.4 159 74.2
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.5e-62 243.4 157 75.8
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 7.5e-62 241.1 157 75.8
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 2.9e-61 239.2 251 51.8
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 4.7e-56 221.9 212 55.2
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 3.1e-55 219.2 191 58.6
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 1.7e-53 213.4 133 77.4
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 5.6e-49 198.4 208 50.5
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 3.6e-48 195.7 182 54.4
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 2.0e-46 189.9 152 64.5
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 8.4e-45 184.5 210 49.5
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 4.2e-44 182.2 123 74.0
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 4.2e-44 182.2 123 74.0
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.6e-40 170.2 142 63.4
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 2.9e-37 159.5 223 41.3
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 2.9e-37 159.5 223 41.3
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 4.6e-35 152.1 95 76.8
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 3.3e-25 119.4 89 68.5
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 4.3e-25 119.0 196 36.7
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 6.0e-19 98.6 65 67.7
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 3.9e-18 95.9 104 49.0
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 6.2e-16 88.6 53 81.1
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.1e-15 87.8 52 76.9
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.1e-15 87.8 51 78.4
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.2e-14 84.3 77 55.8
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 8.4e-13 78.2 73 57.5
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 2.3e-10 70.1 57 63.2
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 3.9e-10 69.3 39 87.2
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 6.7e-10 68.6 57 57.9
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 4.3e-09 65.9 38 78.9
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 6.9e-07 58.5 134 35.8
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 2.6e-06 56.6 38 78.9


User provided reference genes

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