Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G23550 Arabidopsis lyrata HOM05D008615 ORTHO05D021443 1.8e-167 592.4 281 100.0
BcaNung01345 Brassica carinata HOM05D008615 ORTHO05D021443 7.0e-71 271.6 312 48.1
A03p58490 Brassica napus HOM05D008615 ORTHO05D021443 3.0e-58 229.6 178 60.1
AL7G22840 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 4.3e-52 209.1 221 49.8
BraA01t00798Z Brassica rapa HOM05D008615 ORTHO05D011779 4.4e-49 199.1 220 42.7
C01p09880 Brassica napus HOM05D008615 ORTHO05D011779 5.8e-49 198.7 220 42.7
BolC1t00951H Brassica oleracea HOM05D008615 ORTHO05D011779 5.8e-49 198.7 220 42.7
BcaC09g52204 Brassica carinata HOM05D008615 ORTHO05D011779 1.3e-48 197.6 221 42.5
AL5G23100 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.0e-45 188.0 226 45.1
Carub.0007s1099 Capsella rubella HOM05D008615 ORTHO05D011779 1.1e-44 184.5 195 52.3
Thhalv10026918m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 2.5e-44 183.3 228 44.7
AL4G38000 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 2.0e-41 173.7 227 39.6
AL4G38030 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.3e-40 171.0 228 40.8
AL5G23010 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 3.2e-39 166.4 215 42.3
BcaC07g39853 Brassica carinata HOM05D008615 ORTHO05D011779 2.1e-38 163.7 245 38.0
Carub.0005s1047 Capsella rubella HOM05D008615 ORTHO05D021391 1.9e-36 157.1 234 40.2
C01p09790 Brassica napus HOM05D008615 ORTHO05D011779 2.8e-35 153.3 200 40.0
BraA03t14910Z Brassica rapa HOM05D008615 ORTHO05D021443 4.7e-35 152.5 110 62.7
BcaC09g52217 Brassica carinata HOM05D008615 ORTHO05D011779 6.2e-35 152.1 205 40.0
BolC1t00941H Brassica oleracea HOM05D008615 ORTHO05D011779 6.2e-35 152.1 200 39.5
BolC8t50672H Brassica oleracea HOM05D008615 ORTHO05D011779 6.8e-34 148.7 254 36.2
AL1G32050 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.3e-32 144.4 236 34.7
C04p31890 Brassica napus HOM05D008615 ORTHO05D011779 3.8e-32 142.9 198 38.4
C01p09160 Brassica napus HOM05D000574 ORTHO05D004834 4.9e-32 142.5 222 37.8
BolC1t00907H Brassica oleracea HOM05D000574 ORTHO05D004834 4.9e-32 142.5 222 37.8
BcaC03g15654 Brassica carinata HOM05D008615 ORTHO05D027756 3.2e-31 139.8 267 32.6
BolC2t09371H Brassica oleracea HOM05D008615 ORTHO05D027756 3.2e-31 139.8 267 32.6
A01p08200 Brassica napus HOM05D000574 ORTHO05D004834 2.1e-30 137.1 225 35.1
A02p20530 Brassica napus HOM05D008615 ORTHO05D027756 2.1e-30 137.1 200 36.5
BraA01t00766Z Brassica rapa HOM05D000574 ORTHO05D004834 2.1e-30 137.1 225 35.1
BcaC09g51774 Brassica carinata HOM05D000574 ORTHO05D004834 4.6e-30 136.0 223 35.0
C02p33310 Brassica napus HOM05D008615 ORTHO05D027756 1.0e-29 134.8 269 32.3
BcaC09g51771 Brassica carinata HOM05D016251 ORTHO05D017520 2.1e-27 127.1 307 29.6
Carub.0007s2333 Capsella rubella HOM05D000344 ORTHO05D003292 1.4e-26 124.4 228 30.7
CARHR289120 Cardamine hirsuta HOM05D000129 ORTHO05D012460 1.4e-26 124.4 226 35.0
Thhalv10000455m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 4.4e-25 119.4 203 34.5
A08p35230 Brassica napus HOM05D011295 ORTHO05D014420 9.9e-25 118.2 225 34.2
AL7G36450 Arabidopsis lyrata HOM05D013859 ORTHO05D018433 6.4e-24 115.5 204 31.4
BraA01t00768Z Brassica rapa HOM05D016251 ORTHO05D017520 8.4e-24 115.2 224 30.8
BcaC07g38434 Brassica carinata HOM05D011295 ORTHO05D014420 1.9e-23 114.0 224 34.4
BcaC09g52200 Brassica carinata HOM05D016251 ORTHO05D017520 1.9e-23 114.0 224 30.8
C01p09200 Brassica napus HOM05D016251 ORTHO05D017520 1.9e-23 114.0 224 30.8
C08p12010 Brassica napus HOM05D011295 ORTHO05D014420 1.9e-23 114.0 224 34.4
A01p08230 Brassica napus HOM05D016251 ORTHO05D017520 2.4e-23 113.6 221 31.2
BolC4t24741H Brassica oleracea HOM05D008615 ORTHO05D011779 4.2e-23 112.8 196 32.1
BcaC02g10180 Brassica carinata HOM05D008615 ORTHO05D011779 2.7e-22 110.2 198 33.8
CARHR170770 Cardamine hirsuta HOM05D013757 ORTHO05D018429 4.6e-22 109.4 236 31.4
AL1G49360 Arabidopsis lyrata HOM05D011295 ORTHO05D014420 1.0e-21 108.2 229 30.6
C08p13470 Brassica napus HOM05D017215 ORTHO05D031730 1.0e-21 108.2 263 29.7
Carub.0004s1487 Capsella rubella HOM05D008365 ORTHO05D011149 1.3e-21 107.8 221 33.9
BraA08t35431Z Brassica rapa HOM05D011295 ORTHO05D014420 1.7e-21 107.5 228 32.5
AT3G19515 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 2.3e-21 107.1 229 30.1
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 5.1e-21 105.9 230 31.7
AT1G22080 Arabidopsis thaliana HOM05D011295 ORTHO05D014420 5.1e-21 105.9 182 36.3
BcaC09g51927 Brassica carinata HOM05D008615 ORTHO05D031979 6.6e-21 105.5 230 32.2
AL6G29250 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 8.7e-21 105.1 245 31.4
BcaNung01348 Brassica carinata HOM05D008615 ORTHO05D021443 8.7e-21 105.1 108 47.2
C07p56510 Brassica napus HOM05D008615 ORTHO05D021443 2.5e-20 103.6 81 56.8
CARHR237830 Cardamine hirsuta HOM05D008365 ORTHO05D017520 3.3e-20 103.2 225 31.6
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 5.6e-20 102.4 224 31.2
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 2.8e-19 100.1 224 30.4
BcaC07g38550 Brassica carinata HOM05D017215 ORTHO05D031730 3.6e-19 99.8 260 30.4
Carub.0003s1933 Capsella rubella HOM05D003129 ORTHO05D014420 8.1e-19 98.6 225 31.6
A02p02550 Brassica napus HOM05D013859 ORTHO05D018433 1.4e-18 97.8 207 29.5
AL6G29230 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 1.8e-18 97.4 245 30.2
Thhalv10000684m.g Eutrema salsugineum HOM05D008365 ORTHO05D017520 1.8e-18 97.4 208 31.7
CARHR237670 Cardamine hirsuta HOM05D008365 ORTHO05D011149 3.1e-18 96.7 226 31.0
Carub.0008s0192 Capsella rubella HOM05D008365 ORTHO05D011149 1.2e-17 94.7 247 30.4
AL7G22500 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 2.0e-17 94.0 249 30.1
C03p88560 Brassica napus HOM05D008365 ORTHO05D011149 3.4e-17 93.2 230 31.3
AL7G22490 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 4.5e-17 92.8 245 30.2
AL7G22480 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 7.6e-17 92.0 247 30.0
BraA02t05224Z Brassica rapa HOM05D013859 ORTHO05D018433 7.6e-17 92.0 213 27.7
AT4G29760 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 9.9e-17 91.7 248 28.6
CARHR163030 Cardamine hirsuta HOM05D008365 ORTHO05D014862 9.9e-17 91.7 220 30.9
Sp7g27580 Schrenkiella parvula HOM05D008365 ORTHO05D011149 9.9e-17 91.7 251 30.3
C03p88570 Brassica napus HOM05D008365 ORTHO05D011149 1.7e-16 90.9 258 29.5
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 2.9e-16 90.1 207 30.4
Carub.0004s1486 Capsella rubella HOM05D008365 ORTHO05D011149 2.9e-16 90.1 247 27.5
BcaB07g34163 Brassica carinata HOM05D017026 ORTHO05D014420 3.8e-16 89.7 233 28.3
BcaB03g12656 Brassica carinata HOM05D008365 ORTHO05D011149 6.4e-16 89.0 249 28.1
BcaC06g35061 Brassica carinata HOM05D011295 ORTHO05D014420 6.4e-16 89.0 229 30.1
BolC8t47890H Brassica oleracea HOM05D011295 ORTHO05D014420 6.4e-16 89.0 142 35.9
Thhalv10027444m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 6.4e-16 89.0 251 29.9
A08p19110 Brassica napus HOM05D008365 ORTHO05D011149 8.4e-16 88.6 253 29.2
BcaC07g38433 Brassica carinata HOM05D011295 ORTHO05D014420 1.1e-15 88.2 157 36.3
CARHR215270 Cardamine hirsuta HOM05D008365 ORTHO05D011149 1.1e-15 88.2 246 28.5
Carub.0001s4052 Capsella rubella HOM05D008365 ORTHO05D014862 1.9e-15 87.4 220 28.6
BraA08t33873Z Brassica rapa HOM05D008365 ORTHO05D011149 2.4e-15 87.0 248 29.4
AL1G37660 Arabidopsis lyrata HOM05D003129 ORTHO05D038725 3.2e-15 86.7 231 28.1
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 3.2e-15 86.7 196 30.1
BcaC08g44545 Brassica carinata HOM05D000331 ORTHO05D027779 1.2e-14 84.7 163 33.1
AL1G54760 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 2.1e-14 84.0 222 29.7
AT1G48180 Arabidopsis thaliana HOM05D008365 ORTHO05D014862 3.5e-14 83.2 221 29.4
Carub.0001s4054 Capsella rubella HOM05D008365 ORTHO05D014862 3.5e-14 83.2 230 29.6
AT1G23935 Arabidopsis thaliana HOM05D000929 ORTHO05D038725 7.9e-14 82.0 216 29.2
C08p30540 Brassica napus HOM05D008615 ORTHO05D011779 7.9e-14 82.0 139 35.3
A08p19120 Brassica napus HOM05D008365 ORTHO05D011149 1.0e-13 81.6 251 28.7
Thhalv10026005m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 1.8e-13 80.9 243 26.3
AL1G59580 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 3.0e-13 80.1 221 30.3
QL10p030265 Quercus lobata HOM05D000069 ORTHO05D011390 3.0e-13 80.1 189 29.1
Thhalv10011766m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 3.9e-13 79.7 221 30.3
BcaC01g01143 Brassica carinata HOM05D008365 ORTHO05D011149 6.7e-13 79.0 251 28.3
C08p11940 Brassica napus HOM05D011295 ORTHO05D014420 8.7e-13 78.6 124 37.9
AT4G29770 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 1.5e-12 77.8 257 27.2
BcaNung02965 Brassica carinata HOM05D008365 ORTHO05D011149 9.6e-12 75.1 178 28.1
BcaC05g26434 Brassica carinata HOM05D000415 ORTHO05D003909 1.3e-11 74.7 120 35.8
BcaC09g52234 Brassica carinata HOM05D000574 ORTHO05D004834 1.6e-11 74.3 136 33.8
A06p42890 Brassica napus HOM05D013757 ORTHO05D018429 1.6e-11 74.3 135 34.8
C02p06790 Brassica napus HOM05D013859 ORTHO05D018433 6.2e-11 72.4 94 38.3
C02p06850 Brassica napus HOM05D013859 ORTHO05D018433 8.1e-11 72.0 94 38.3
C02p06960 Brassica napus HOM05D013859 ORTHO05D018433 8.1e-11 72.0 94 38.3
CARHR263650 Cardamine hirsuta HOM05D008365 ORTHO05D014862 1.4e-10 71.2 212 28.8
AL4G17220 Arabidopsis lyrata HOM05D002666 ORTHO05D015915 2.4e-10 70.5 82 43.9
BcaC03g13485 Brassica carinata HOM05D013859 ORTHO05D018433 2.4e-10 70.5 94 36.2
C03p88590 Brassica napus HOM05D008365 ORTHO05D011149 2.4e-10 70.5 256 26.2
C08p30550 Brassica napus HOM05D008615 ORTHO05D011779 4.0e-10 69.7 94 39.4
BraA08t33874Z Brassica rapa HOM05D008365 ORTHO05D011149 5.3e-10 69.3 256 25.4
BcaB03g12655 Brassica carinata HOM05D008365 ORTHO05D011149 6.9e-10 68.9 250 25.6
Carub.0001s4053 Capsella rubella HOM05D008365 ORTHO05D014862 6.9e-10 68.9 183 29.0
CARHR063690 Cardamine hirsuta HOM05D008365 ORTHO05D014862 6.9e-10 68.9 227 26.9
CARHR251110 Cardamine hirsuta HOM05D008365 ORTHO05D011149 6.9e-10 68.9 237 27.4
A07p02810 Brassica napus HOM05D008365 ORTHO05D011149 1.2e-09 68.2 227 26.0
BraA07t28079Z Brassica rapa HOM05D008365 ORTHO05D011149 1.2e-09 68.2 227 26.0
AT3G44780 Arabidopsis thaliana HOM05D008615 ORTHO05D021391 2.0e-09 67.4 100 39.0
BcaC09g51862 Brassica carinata HOM05D008365 ORTHO05D011149 2.0e-09 67.4 254 25.6
BolC1t00807H Brassica oleracea HOM05D008365 ORTHO05D011149 2.0e-09 67.4 254 25.6
A08p19130 Brassica napus HOM05D008365 ORTHO05D011149 3.4e-09 66.6 256 25.0
CARHR063260 Cardamine hirsuta HOM05D008365 ORTHO05D014862 5.8e-09 65.9 227 26.9
C01p08200 Brassica napus HOM05D008365 ORTHO05D011149 9.9e-09 65.1 254 25.2
CARHR063700 Cardamine hirsuta HOM05D008365 ORTHO05D014862 9.9e-09 65.1 218 26.6
BcaC06g33427 Brassica carinata HOM05D013757 ORTHO05D018429 1.3e-08 64.7 222 27.0
QL10p029934 Quercus lobata HOM05D000069 ORTHO05D011390 1.3e-08 64.7 180 27.8
BraA01t00699Z Brassica rapa HOM05D008365 ORTHO05D011149 8.4e-08 62.0 248 25.4
BcaC03g17688 Brassica carinata HOM05D017026 ORTHO05D020016 1.1e-07 61.6 127 33.1
A01p07560 Brassica napus HOM05D008365 ORTHO05D011149 1.1e-07 61.6 248 25.4
BolC8t48977H Brassica oleracea HOM05D017215 ORTHO05D031730 1.9e-07 60.8 161 28.0
C07p12810 Brassica napus HOM05D017215 ORTHO05D024431 2.4e-07 60.5 78 44.9
C02p56970 Brassica napus HOM05D017026 ORTHO05D020016 3.2e-07 60.1 125 32.8
BolC2t11766H Brassica oleracea HOM05D017026 ORTHO05D020016 3.2e-07 60.1 125 32.8
C07p47320 Brassica napus HOM05D013757 ORTHO05D018429 1.6e-06 57.8 114 32.5
A04p29070 Brassica napus HOM05D008615 ORTHO05D011779 6.0e-06 55.8 76 34.2


User provided reference genes

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