Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 5.9e-71 270.8 139 100.0
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 3.2e-16 89.0 113 44.2
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 1.2e-15 87.0 113 43.4
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 1.2e-15 87.0 113 43.4
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 1.2e-15 87.0 113 42.5
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.2e-15 87.0 99 47.5
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 1.6e-15 86.7 113 42.5
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.0e-14 84.0 116 42.2
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.3e-14 83.6 114 46.5
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 1.7e-14 83.2 105 42.9
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.7e-14 83.2 97 48.5
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.3e-14 82.8 119 42.9
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 3.0e-14 82.4 92 51.1
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 3.0e-14 82.4 92 51.1
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 3.0e-14 82.4 92 51.1
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 3.9e-14 82.0 92 50.0
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 5.1e-14 81.6 92 51.1
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 5.1e-14 81.6 92 51.1
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 8.7e-14 80.9 98 44.9
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.1e-13 80.5 109 44.0
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.5e-13 79.3 116 44.8
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 4.3e-13 78.6 92 48.9
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 9.6e-13 77.4 105 41.0
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.6e-12 76.6 117 41.9
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.6e-12 76.6 115 39.1
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.1e-12 76.3 101 44.6
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 2.1e-12 76.3 95 46.3
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.8e-12 75.9 102 43.1
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 4.8e-12 75.1 92 45.7
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 8.1e-12 74.3 94 48.9
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.4e-11 73.6 93 45.2
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 2.4e-11 72.8 107 36.4
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 2.4e-11 72.8 94 39.4
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 3.1e-11 72.4 95 45.3
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 4.0e-11 72.0 93 40.9
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 4.0e-11 72.0 95 43.2
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 4.0e-11 72.0 95 43.2
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 6.9e-11 71.2 94 47.9
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 9.0e-11 70.9 85 43.5
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.2e-10 70.5 95 43.2
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.6e-10 69.3 143 37.8
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 2.6e-10 69.3 107 37.4
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 7.6e-10 67.8 95 35.8
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 9.9e-10 67.4 95 41.1
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 9.9e-10 67.4 100 36.0
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.3e-09 67.0 109 33.9
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 1.3e-09 67.0 98 38.8
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 1.3e-09 67.0 93 37.6
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.3e-09 67.0 93 37.6
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.7e-09 66.6 92 45.7
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 1.7e-09 66.6 98 35.7
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.7e-09 66.6 99 33.3
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.2e-09 66.2 70 48.6
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 2.9e-09 65.9 96 36.5
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 3.8e-09 65.5 98 34.7
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.8e-09 65.5 109 33.0
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.9e-09 65.1 71 42.3
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 6.4e-09 64.7 109 36.7
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.4e-09 64.3 109 32.1
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.1e-08 63.9 92 37.0
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 1.1e-08 63.9 95 37.9
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 1.1e-08 63.9 95 35.8
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.4e-08 63.5 109 33.9
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.4e-08 63.5 71 42.3
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 2.4e-08 62.8 103 35.0
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 2.4e-08 62.8 93 35.5
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 4.2e-08 62.0 101 37.6
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 4.2e-08 62.0 93 34.4
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 7.1e-08 61.2 77 37.7
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 9.3e-08 60.8 98 35.7
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 9.3e-08 60.8 101 36.6
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 9.3e-08 60.8 101 36.6
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 1.2e-07 60.5 71 40.8
C07p57610 Brassica napus HOM05D005423 ORTHO05D006223 1.6e-07 60.1 92 45.7
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 2.7e-07 59.3 99 33.3
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.7e-07 59.3 110 30.9
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.7e-07 59.3 77 35.1
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 3.5e-07 58.9 95 32.6
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 3.5e-07 58.9 94 33.0
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 4.6e-07 58.5 114 31.6
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 6.0e-07 58.2 95 36.8
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 6.0e-07 58.2 87 33.3
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 7.9e-07 57.8 66 47.0
BolC7t46226H Brassica oleracea HOM05D005423 ORTHO05D006223 7.9e-07 57.8 92 44.6
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 7.9e-07 57.8 103 34.0
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.0e-06 57.4 75 34.7
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 1.0e-06 57.4 94 40.4
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.3e-06 57.0 72 37.5
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 1.3e-06 57.0 72 37.5
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.3e-06 57.0 112 31.2
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 1.3e-06 57.0 109 33.0
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 1.7e-06 56.6 103 31.1
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 2.3e-06 56.2 92 37.0
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.3e-06 56.2 109 32.1
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 2.3e-06 56.2 105 33.3
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 3.0e-06 55.8 72 36.1
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 3.9e-06 55.5 76 32.9
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 3.9e-06 55.5 95 33.7
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 3.9e-06 55.5 82 36.6
Lsat_1_v5_gn_3_42520 Lactuca sativa HOM05D007205 ORTHO05D009175 5.1e-06 55.1 93 37.6
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 6.6e-06 54.7 107 32.7
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 6.6e-06 54.7 78 34.6
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 6.6e-06 54.7 102 31.4
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 8.7e-06 54.3 78 34.6
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 8.7e-06 54.3 78 34.6
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 8.7e-06 54.3 70 28.6
SalBow2G2732 Salvia bowleyana HOM05D007205 ORTHO05D009175 8.7e-06 54.3 98 35.7


User provided reference genes

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