Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G22840 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 2.0e-186 655.6 320 100.0
Carub.0007s1099 Capsella rubella HOM05D008615 ORTHO05D011779 1.0e-110 404.1 240 83.3
BraA01t00798Z Brassica rapa HOM05D008615 ORTHO05D011779 1.7e-84 317.0 303 50.8
C01p09880 Brassica napus HOM05D008615 ORTHO05D011779 4.8e-84 315.5 303 50.5
BolC1t00951H Brassica oleracea HOM05D008615 ORTHO05D011779 4.8e-84 315.5 303 50.5
BcaC09g52204 Brassica carinata HOM05D008615 ORTHO05D011779 1.7e-81 307.0 297 50.8
Thhalv10026918m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 2.2e-65 253.4 227 59.5
C01p09790 Brassica napus HOM05D008615 ORTHO05D011779 4.4e-53 212.6 226 50.4
BolC1t00941H Brassica oleracea HOM05D008615 ORTHO05D011779 4.4e-53 212.6 226 50.4
AL7G23550 Arabidopsis lyrata HOM05D008615 ORTHO05D021443 4.9e-52 209.1 221 49.8
BcaC09g52217 Brassica carinata HOM05D008615 ORTHO05D011779 7.0e-51 205.3 199 53.8
AL4G38030 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 4.5e-50 202.6 320 35.3
AL4G38000 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 7.8e-50 201.8 314 36.0
BcaC07g39853 Brassica carinata HOM05D008615 ORTHO05D011779 2.3e-49 200.3 330 36.1
AL5G23010 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 5.6e-48 195.7 294 36.7
AL5G23100 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 2.1e-47 193.7 246 41.5
BcaNung01345 Brassica carinata HOM05D008615 ORTHO05D021443 6.1e-47 192.2 276 39.1
Carub.0005s1047 Capsella rubella HOM05D008615 ORTHO05D021391 1.5e-45 187.6 298 37.6
BolC8t50672H Brassica oleracea HOM05D008615 ORTHO05D011779 5.2e-38 162.5 250 38.8
AL1G32050 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 3.7e-36 156.4 323 31.6
C04p31890 Brassica napus HOM05D008615 ORTHO05D011779 5.4e-35 152.5 233 36.1
A03p58490 Brassica napus HOM05D008615 ORTHO05D021443 3.9e-33 146.4 178 42.7
C01p09160 Brassica napus HOM05D000574 ORTHO05D004834 3.9e-33 146.4 237 35.4
BolC1t00907H Brassica oleracea HOM05D000574 ORTHO05D004834 3.9e-33 146.4 237 35.4
BcaC09g51774 Brassica carinata HOM05D000574 ORTHO05D004834 1.2e-31 141.4 285 31.9
A01p08200 Brassica napus HOM05D000574 ORTHO05D004834 2.6e-29 133.7 237 32.5
BraA01t00766Z Brassica rapa HOM05D000574 ORTHO05D004834 2.6e-29 133.7 237 32.5
A02p20530 Brassica napus HOM05D008615 ORTHO05D027756 4.1e-27 126.3 301 28.2
BcaC03g15654 Brassica carinata HOM05D008615 ORTHO05D027756 7.1e-27 125.6 301 28.2
BolC2t09371H Brassica oleracea HOM05D008615 ORTHO05D027756 7.1e-27 125.6 301 28.2
Thhalv10000455m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 2.1e-26 124.0 227 30.4
BcaC02g10180 Brassica carinata HOM05D008615 ORTHO05D011779 7.8e-26 122.1 232 34.5
C02p33310 Brassica napus HOM05D008615 ORTHO05D027756 2.3e-25 120.6 303 28.1
BolC4t24741H Brassica oleracea HOM05D008615 ORTHO05D011779 1.1e-24 118.2 224 30.8
BcaC09g51927 Brassica carinata HOM05D008615 ORTHO05D031979 2.5e-24 117.1 258 32.6
BcaC09g51771 Brassica carinata HOM05D016251 ORTHO05D017520 1.1e-22 111.7 282 28.4
Carub.0007s2333 Capsella rubella HOM05D000344 ORTHO05D003292 8.9e-22 108.6 268 27.6
CARHR289120 Cardamine hirsuta HOM05D000129 ORTHO05D012460 8.9e-22 108.6 238 32.4
C08p13470 Brassica napus HOM05D017215 ORTHO05D031730 1.2e-21 108.2 201 31.8
AT3G44780 Arabidopsis thaliana HOM05D008615 ORTHO05D021391 2.6e-21 107.1 176 36.4
BraA03t14910Z Brassica rapa HOM05D008615 ORTHO05D021443 5.8e-21 105.9 113 46.0
CARHR237830 Cardamine hirsuta HOM05D008365 ORTHO05D017520 5.8e-21 105.9 273 29.3
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 7.6e-21 105.5 262 28.6
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 1.7e-20 104.4 283 29.3
A08p35230 Brassica napus HOM05D011295 ORTHO05D014420 2.9e-20 103.6 239 30.5
C08p30540 Brassica napus HOM05D008615 ORTHO05D011779 8.4e-20 102.1 139 41.0
BcaC07g38434 Brassica carinata HOM05D011295 ORTHO05D014420 1.9e-19 100.9 237 29.1
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 1.9e-19 100.9 283 29.3
C08p12010 Brassica napus HOM05D011295 ORTHO05D014420 1.9e-19 100.9 237 29.1
BcaC09g52200 Brassica carinata HOM05D016251 ORTHO05D017520 2.4e-19 100.5 271 31.4
C01p09200 Brassica napus HOM05D016251 ORTHO05D017520 2.4e-19 100.5 271 31.4
BraA01t00768Z Brassica rapa HOM05D016251 ORTHO05D017520 2.1e-18 97.4 272 30.5
CARHR170770 Cardamine hirsuta HOM05D013757 ORTHO05D018429 3.5e-18 96.7 208 31.7
A01p08230 Brassica napus HOM05D016251 ORTHO05D017520 4.6e-18 96.3 218 33.5
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 4.6e-18 96.3 251 27.5
AT3G19515 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 6.0e-18 95.9 266 27.4
BcaC07g38550 Brassica carinata HOM05D017215 ORTHO05D031730 1.0e-17 95.1 198 30.8
CiPaw.09G138300 Carya illinoinensis HOM05D000069 ORTHO05D000060 1.3e-17 94.7 242 26.9
Carub.0004s1487 Capsella rubella HOM05D008365 ORTHO05D011149 2.3e-17 94.0 217 30.4
BcaNung01348 Brassica carinata HOM05D008615 ORTHO05D021443 6.6e-17 92.4 90 48.9
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 8.7e-17 92.0 218 31.7
BcaC09g52234 Brassica carinata HOM05D000574 ORTHO05D004834 1.1e-16 91.7 149 36.2
AL7G36450 Arabidopsis lyrata HOM05D013859 ORTHO05D018433 2.5e-16 90.5 256 24.6
AL1G49360 Arabidopsis lyrata HOM05D011295 ORTHO05D014420 3.3e-16 90.1 235 29.8
BraA08t35431Z Brassica rapa HOM05D011295 ORTHO05D014420 1.6e-15 87.8 220 29.1
BcaC08g44545 Brassica carinata HOM05D000331 ORTHO05D027779 2.1e-15 87.4 161 31.7
AL6G29250 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 8.1e-15 85.5 268 27.2
A02p02550 Brassica napus HOM05D013859 ORTHO05D018433 1.4e-14 84.7 234 24.8
AT1G22080 Arabidopsis thaliana HOM05D011295 ORTHO05D014420 9.0e-14 82.0 176 30.1
Thhalv10000684m.g Eutrema salsugineum HOM05D008365 ORTHO05D017520 9.0e-14 82.0 204 26.0
A08p04900 Brassica napus HOM05D030632 ORTHO05D021391 4.4e-13 79.7 151 32.5
BraA08t32516Z Brassica rapa HOM05D030632 ORTHO05D021391 4.4e-13 79.7 151 32.5
AL7G22480 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 7.6e-13 79.0 250 25.2
BolC8t47890H Brassica oleracea HOM05D011295 ORTHO05D014420 7.6e-13 79.0 246 26.0
Sp7g27580 Schrenkiella parvula HOM05D008365 ORTHO05D011149 9.9e-13 78.6 256 25.0
BcaC05g26434 Brassica carinata HOM05D000415 ORTHO05D003909 1.7e-12 77.8 281 26.0
BraA02t05224Z Brassica rapa HOM05D013859 ORTHO05D018433 2.9e-12 77.0 241 23.2
AL6G29230 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 3.8e-12 76.6 249 24.9
Carub.0003s1933 Capsella rubella HOM05D003129 ORTHO05D014420 3.8e-12 76.6 257 23.3
Thhalv10026005m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 4.9e-12 76.3 247 25.9
Thhalv10027444m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 4.9e-12 76.3 255 24.7
Duzib187G1413 Durio zibethinus HOM05D000069 ORTHO05D016924 8.4e-12 75.5 223 26.0
AT4G29760 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 1.1e-11 75.1 253 26.9
BcaNung02965 Brassica carinata HOM05D008365 ORTHO05D011149 1.1e-11 75.1 166 30.1
Thhalv10011766m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 1.1e-11 75.1 222 26.6
Carub.0004s1486 Capsella rubella HOM05D008365 ORTHO05D011149 1.4e-11 74.7 250 24.0
BcaC09g51862 Brassica carinata HOM05D008365 ORTHO05D011149 1.9e-11 74.3 221 28.1
C03p88560 Brassica napus HOM05D008365 ORTHO05D011149 1.9e-11 74.3 215 26.5
BolC1t00807H Brassica oleracea HOM05D008365 ORTHO05D011149 1.9e-11 74.3 221 28.1
C01p07570 Brassica napus HOM05D008615 ORTHO05D031979 2.4e-11 73.9 122 33.6
BolC1t00737H Brassica oleracea HOM05D008615 ORTHO05D031979 2.4e-11 73.9 122 33.6
AL1G37660 Arabidopsis lyrata HOM05D003129 ORTHO05D038725 4.2e-11 73.2 227 26.9
Carub.0001s4054 Capsella rubella HOM05D008365 ORTHO05D014862 4.2e-11 73.2 218 28.9
AL7G22500 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 7.1e-11 72.4 253 25.3
CARHR237670 Cardamine hirsuta HOM05D008365 ORTHO05D011149 1.2e-10 71.6 215 28.4
AL7G22490 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 2.1e-10 70.9 250 25.2
C08p05210 Brassica napus HOM05D030632 ORTHO05D021391 4.6e-10 69.7 105 32.4
C07p56510 Brassica napus HOM05D008615 ORTHO05D021443 6.0e-10 69.3 85 40.0
C03p88570 Brassica napus HOM05D008365 ORTHO05D011149 7.8e-10 68.9 248 25.0
BcaC07g38433 Brassica carinata HOM05D011295 ORTHO05D014420 1.0e-09 68.6 115 34.8
CARHR215270 Cardamine hirsuta HOM05D008365 ORTHO05D011149 1.0e-09 68.6 251 25.5
TPR.G11732 Trifolium pratense HOM05D000069 ORTHO05D000060 1.7e-09 67.8 277 24.5
SMO199G0113 Selaginella moellendorffii HOM05D000069 ORTHO05D000060 2.3e-09 67.4 212 23.6
CARHR163030 Cardamine hirsuta HOM05D008365 ORTHO05D014862 3.0e-09 67.0 215 24.7
Carub.0008s0192 Capsella rubella HOM05D008365 ORTHO05D011149 3.9e-09 66.6 252 24.6
Carub.0001s4052 Capsella rubella HOM05D008365 ORTHO05D014862 5.1e-09 66.2 218 28.4
Aa31LG2G14960 Aethionema arabicum HOM05D000069 ORTHO05D000060 8.7e-09 65.5 218 25.7
BcaB03g12656 Brassica carinata HOM05D008365 ORTHO05D011149 1.5e-08 64.7 256 23.8
C02p06850 Brassica napus HOM05D013859 ORTHO05D018433 1.5e-08 64.7 84 34.5
C02p06960 Brassica napus HOM05D013859 ORTHO05D018433 1.5e-08 64.7 84 34.5
Medtr2g067560 Medicago truncatula HOM05D000069 ORTHO05D048850 1.5e-08 64.7 208 24.5
A08p11000 Brassica napus HOM05D002706 ORTHO05D003253 1.9e-08 64.3 175 28.0
C02p06790 Brassica napus HOM05D013859 ORTHO05D018433 1.9e-08 64.3 84 33.3
C01p08200 Brassica napus HOM05D008365 ORTHO05D011149 2.5e-08 63.9 221 27.6
C08p30550 Brassica napus HOM05D008615 ORTHO05D011779 2.5e-08 63.9 92 39.1
BolC8t48977H Brassica oleracea HOM05D017215 ORTHO05D031730 2.5e-08 63.9 134 30.6
FAN06G4952 Fragaria x ananassa HOM05D000069 ORTHO05D025459 4.3e-08 63.2 219 26.5
BcaC01g01143 Brassica carinata HOM05D008365 ORTHO05D011149 5.6e-08 62.8 249 23.7
Carub.0001s4053 Capsella rubella HOM05D008365 ORTHO05D014862 5.6e-08 62.8 220 29.1
FvH4_7g32110 Fragaria vesca HOM05D000069 ORTHO05D025459 5.6e-08 62.8 220 26.4
BcaC06g33427 Brassica carinata HOM05D013757 ORTHO05D018429 7.3e-08 62.4 249 22.9
C08p11940 Brassica napus HOM05D011295 ORTHO05D014420 7.3e-08 62.4 87 37.9
A06p42890 Brassica napus HOM05D013757 ORTHO05D018429 9.6e-08 62.0 111 34.2
A08p19120 Brassica napus HOM05D008365 ORTHO05D011149 1.3e-07 61.6 261 25.3
Psat1g198800 Pisum sativum HOM05D000069 ORTHO05D011441 1.3e-07 61.6 211 24.6
RcHm_v2.0_Chr6g0264751 Rosa chinensis HOM05D000069 ORTHO05D043837 1.3e-07 61.6 252 26.6
AT2G27420 Arabidopsis thaliana HOM05D000069 ORTHO05D000060 2.8e-07 60.5 225 25.3
CARHR063700 Cardamine hirsuta HOM05D008365 ORTHO05D014862 2.8e-07 60.5 216 26.9
BcaC09g49935 Brassica carinata HOM05D000069 ORTHO05D000060 4.8e-07 59.7 221 24.0
A08p19110 Brassica napus HOM05D008365 ORTHO05D011149 4.8e-07 59.7 249 23.3
C01p31020 Brassica napus HOM05D000069 ORTHO05D000060 4.8e-07 59.7 221 24.0
BraA08t33873Z Brassica rapa HOM05D008365 ORTHO05D011149 4.8e-07 59.7 249 23.3
CARHR028370 Cardamine hirsuta HOM05D000069 ORTHO05D000060 4.8e-07 59.7 244 22.5
Lalb_Chr12g0205101 Lupinus albus HOM05D000069 ORTHO05D008115 4.8e-07 59.7 206 27.7
AL1G61110 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 6.2e-07 59.3 222 28.4
BolC1t03037H Brassica oleracea HOM05D000069 ORTHO05D000060 6.2e-07 59.3 221 24.4
CAN.G1286.1 Capsicum annuum HOM05D000069 ORTHO05D000060 6.2e-07 59.3 215 23.7
A01p07560 Brassica napus HOM05D008365 ORTHO05D011149 8.1e-07 58.9 215 26.0
BraA01t00699Z Brassica rapa HOM05D008365 ORTHO05D011149 8.1e-07 58.9 215 26.0
CARHR235030 Cardamine hirsuta HOM05D008615 ORTHO05D011779 8.1e-07 58.9 79 35.4
Sopen02g021980 Solanum pennellii HOM05D000069 ORTHO05D000060 8.1e-07 58.9 217 28.1
Lsat_1_v5_gn_4_28280 Lactuca sativa HOM05D000069 ORTHO05D000060 1.1e-06 58.5 223 28.3
SMO230G0027 Selaginella moellendorffii HOM05D000069 ORTHO05D000060 1.1e-06 58.5 209 24.9
Solyc02g077040.4 Solanum lycopersicum HOM05D000069 ORTHO05D000060 1.4e-06 58.2 217 28.1
AL4G17220 Arabidopsis lyrata HOM05D002666 ORTHO05D015915 1.8e-06 57.8 96 29.2
BraA08t33874Z Brassica rapa HOM05D008365 ORTHO05D011149 1.8e-06 57.8 276 24.3
Sc07g0005280 Simmondsia chinensis HOM05D000069 ORTHO05D000060 1.8e-06 57.8 226 27.4
Lj6g0005682 Lotus japonicus HOM05D000069 ORTHO05D000060 3.1e-06 57.0 220 20.9
C03p88590 Brassica napus HOM05D008365 ORTHO05D011149 4.0e-06 56.6 276 23.9
Phvul.002G239300 Phaseolus vulgaris HOM05D000069 ORTHO05D008115 4.0e-06 56.6 206 26.7
BcaB03g12655 Brassica carinata HOM05D008365 ORTHO05D011149 5.3e-06 56.2 274 23.7
SMO358G0710 Selaginella moellendorffii HOM05D000069 ORTHO05D000060 5.3e-06 56.2 214 25.2


User provided reference genes

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