Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 2.3e-279 964.9 494 100.0
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 7.8e-251 870.2 494 88.3
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 4.0e-239 831.2 494 84.8
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 3.4e-238 828.2 495 84.8
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 3.7e-224 781.6 509 80.0
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 1.2e-211 740.0 499 76.4
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 1.1e-209 733.4 502 77.7
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 2.8e-208 728.8 502 76.7
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 2.8e-208 728.8 502 76.7
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 2.8e-208 728.8 502 76.5
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 6.9e-207 724.2 503 76.7
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 3.8e-181 638.6 501 66.3
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 1.4e-146 523.9 501 54.5
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 9.5e-140 501.1 508 53.0
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 2.8e-139 499.6 517 51.6
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 5.2e-138 495.4 517 51.6
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 2.9e-136 489.6 511 53.2
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 1.4e-135 487.3 507 51.1
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 5.4e-135 485.3 508 52.0
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.6e-134 483.8 506 51.8
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 3.5e-134 482.6 506 51.6
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 4.6e-134 482.3 512 52.3
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 5.1e-133 478.8 508 50.4
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 7.3e-132 474.9 508 51.2
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 9.6e-132 474.6 501 51.7
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 9.6e-132 474.6 503 51.9
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 1.4e-130 470.7 510 50.2
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 1.8e-130 470.3 500 49.4
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 2.2e-128 463.4 496 50.8
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 4.9e-128 462.2 501 49.9
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 5.4e-127 458.8 507 48.1
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 5.4e-127 458.8 498 49.2
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 1.9e-124 450.3 503 48.1
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 3.3e-124 449.5 508 48.6
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 5.6e-124 448.7 523 47.6
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 2.1e-123 446.8 510 47.8
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 2.4e-122 443.4 493 49.5
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.2e-121 441.0 487 49.3
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.2e-121 441.0 487 48.7
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 2.0e-121 440.3 430 54.9
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 4.5e-121 439.1 511 47.9
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 9.9e-121 438.0 511 48.3
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 1.7e-120 437.2 482 48.5
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 2.7e-118 429.9 507 47.1
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 1.0e-117 427.9 509 47.9
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 1.5e-116 424.1 511 45.6
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 1.5e-116 424.1 423 52.7
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 1.5e-116 424.1 507 47.7
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 1.9e-116 423.7 506 47.0
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 2.4e-114 416.8 502 48.4
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 5.3e-114 415.6 509 46.8
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 6.9e-114 415.2 506 46.4
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 2.2e-112 410.2 509 46.2
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 2.7e-110 403.3 507 45.4
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 2.7e-110 403.3 416 52.4
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 5.1e-109 399.1 515 44.3
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 6.7e-109 398.7 427 51.8
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 8.7e-109 398.3 504 45.2
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 1.1e-106 391.3 451 46.3
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 9.0e-106 388.3 507 44.6
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 4.5e-105 386.0 516 45.2
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 1.4e-103 380.9 414 50.0
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.7e-102 376.7 415 49.2
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 6.0e-102 375.6 415 49.2
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 1.6e-99 367.5 510 44.5
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 8.2e-99 365.2 504 42.1
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 1.4e-85 321.2 420 42.6
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 1.8e-85 320.9 407 42.3
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 4.4e-84 316.2 362 48.9
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 2.2e-83 313.9 503 39.0
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 3.7e-83 313.2 297 55.9
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 4.8e-83 312.8 418 42.1
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 2.6e-73 280.4 473 37.0
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 1.5e-71 274.6 226 59.7
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 1.6e-65 254.6 557 33.8
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 4.2e-63 246.5 566 31.4
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 3.4e-60 236.9 500 32.4
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 2.9e-56 223.8 498 31.9
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 6.4e-35 152.9 477 26.8
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 6.2e-30 136.3 165 44.2
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 8.3e-27 125.9 127 52.8
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 8.6e-24 115.9 450 24.4
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 1.1e-13 82.4 512 23.2
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 2.2e-11 74.7 228 24.1


User provided reference genes

Program Settings