Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G22650 Arabidopsis lyrata HOM05D005692 ORTHO05D006953 2.4e-56 221.9 104 100.0
AT4G29660 Arabidopsis thaliana HOM05D005692 ORTHO05D006953 2.4e-56 221.9 104 100.0
CARHR237500 Cardamine hirsuta HOM05D005692 ORTHO05D006953 2.0e-55 218.8 104 98.1
Carub.0007s1086 Capsella rubella HOM05D005692 ORTHO05D006953 9.9e-55 216.5 102 99.0
Thhalv10026646m.g Eutrema salsugineum HOM05D005692 ORTHO05D006953 1.7e-54 215.7 102 96.1
Sp7g27450 Schrenkiella parvula HOM05D005692 ORTHO05D006953 2.2e-54 215.3 104 95.2
Sp3g29900 Schrenkiella parvula HOM05D005692 ORTHO05D006953 1.4e-53 212.6 104 94.2
BcaC09g51744 Brassica carinata HOM05D005692 ORTHO05D006953 4.2e-53 211.1 101 96.0
BcaC09g52211 Brassica carinata HOM05D005692 ORTHO05D006953 5.4e-53 210.7 101 95.0
A01p08470 Brassica napus HOM05D005692 ORTHO05D006953 5.4e-53 210.7 101 95.0
C01p09830 Brassica napus HOM05D005692 ORTHO05D006953 5.4e-53 210.7 101 95.0
BolC1t00945H Brassica oleracea HOM05D005692 ORTHO05D006953 5.4e-53 210.7 101 95.0
BraA01t00794Z Brassica rapa HOM05D005692 ORTHO05D006953 5.4e-53 210.7 101 95.0
Aa31LG2G20910 Aethionema arabicum HOM05D005692 ORTHO05D006953 3.0e-51 204.9 104 89.4
THA.LOC104801884 Tarenaya hassleriana HOM05D005692 ORTHO05D006953 7.1e-45 183.7 96 82.3
EL10Ac2g04637 Beta vulgaris HOM05D005692 ORTHO05D006953 1.5e-39 166.0 89 79.8
Cpa.g.sc20.158 Carica papaya HOM05D005692 ORTHO05D006953 2.6e-39 165.2 94 74.5
Sc14g0000750 Simmondsia chinensis HOM05D005692 ORTHO05D006953 4.5e-39 164.5 89 80.9
AUR62039390 Chenopodium quinoa HOM05D005692 ORTHO05D006953 2.2e-38 162.2 89 77.5
Ah.09g223860 Amaranthus hybridus HOM05D005692 ORTHO05D006953 6.4e-38 160.6 89 77.5
Eucgr.C03889 Eucalyptus grandis HOM05D005692 ORTHO05D006953 6.4e-38 160.6 94 72.3
TWI34G0948 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 6.4e-38 160.6 92 75.0
Gorai.005G027900 Gossypium raimondii HOM05D005692 ORTHO05D006953 4.2e-37 157.9 94 72.3
PGR102G3100 Punica granatum HOM05D005692 ORTHO05D006953 4.2e-37 157.9 93 72.0
Duzib151G0847 Durio zibethinus HOM05D005692 ORTHO05D006953 5.4e-37 157.5 94 69.1
Gohir.A02G019200 Gossypium hirsutum HOM05D005692 ORTHO05D006953 5.4e-37 157.5 91 73.6
Gohir.D02G022500 Gossypium hirsutum HOM05D005692 ORTHO05D006953 5.4e-37 157.5 91 73.6
Hund14283 Selenicereus undatus HOM05D005692 ORTHO05D006953 5.4e-37 157.5 89 74.2
COL.COLO4_18212 Corchorus olitorius HOM05D005692 ORTHO05D006953 1.2e-36 156.4 98 66.3
MD15G1205700 Malus domestica HOM05D005692 ORTHO05D006953 1.2e-36 156.4 93 73.1
MD02G1077000 Malus domestica HOM05D005692 ORTHO05D006953 1.6e-36 156.0 93 73.1
Potri.012G001800 Populus trichocarpa HOM05D005692 ORTHO05D006953 1.6e-36 156.0 89 75.3
Sabra12G0019500 Salix brachista HOM05D005692 ORTHO05D006953 1.6e-36 156.0 89 75.3
Sabra12G0019700 Salix brachista HOM05D005692 ORTHO05D006953 1.6e-36 156.0 89 75.3
Migut.J00600 Erythranthe guttata HOM05D005692 ORTHO05D006953 2.1e-36 155.6 89 73.0
Migut.J01065 Erythranthe guttata HOM05D005692 ORTHO05D006953 2.1e-36 155.6 89 73.0
Ah.10g037300 Amaranthus hybridus HOM05D005692 ORTHO05D006953 2.7e-36 155.2 89 75.3
ClCG03G015670 Citrullus lanatus HOM05D005692 ORTHO05D006953 2.7e-36 155.2 92 71.7
MELO3C015461.2 Cucumis melo HOM05D005692 ORTHO05D006953 2.7e-36 155.2 92 71.7
CSS0005546 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 6.0e-36 154.1 94 67.0
CSS0025569 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 6.0e-36 154.1 94 67.0
CAN.G1241.20 Capsicum annuum HOM05D005692 ORTHO05D006953 6.0e-36 154.1 87 73.6
Ciclev10010392m.g Citrus clementina HOM05D005692 ORTHO05D006953 6.0e-36 154.1 91 70.3
Nn8g38892 Nelumbo nucifera HOM05D005692 ORTHO05D006953 7.9e-36 153.7 89 74.2
Peaxi162Scf00015g00716 Petunia axillaris HOM05D005692 ORTHO05D006953 7.9e-36 153.7 87 74.7
PGSC0003DMG400000281 Solanum tuberosum HOM05D005692 ORTHO05D006953 7.9e-36 153.7 87 74.7
HPP92_009139 Vanilla planifolia HOM05D005692 ORTHO05D006953 7.9e-36 153.7 91 70.3
CsaV3_1G040340 Cucumis sativus L. HOM05D005692 ORTHO05D006953 1.0e-35 153.3 92 69.6
Nn6g35447 Nelumbo nucifera HOM05D005692 ORTHO05D006953 1.0e-35 153.3 89 73.0
Prupe.7G211400 Prunus persica HOM05D005692 ORTHO05D006953 1.0e-35 153.3 93 69.9
Atru.BG.21.p Acer truncatum HOM05D005692 ORTHO05D006953 1.3e-35 152.9 89 71.9
Manes.03G032800 Manihot esculenta HOM05D005692 ORTHO05D006953 1.3e-35 152.9 91 69.2
Nitab4.5_0000540g0260 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.3e-35 152.9 87 73.6
Nitab4.5_0009931g0010 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.3e-35 152.9 87 73.6
Oeu039606.1 Olea europaea HOM05D005692 ORTHO05D006953 1.3e-35 152.9 89 75.3
Dinv36757 Davidia involucrata HOM05D005692 ORTHO05D006953 1.8e-35 152.5 91 69.2
Sopen12g003750 Solanum pennellii HOM05D005692 ORTHO05D006953 1.8e-35 152.5 87 73.6
Cfa003097 Carpinus fangiana HOM05D005692 ORTHO05D006953 2.3e-35 152.1 91 70.3
DCAR_011984 Daucus carota HOM05D005692 ORTHO05D006953 2.3e-35 152.1 89 68.5
Glyma.08G343600 Glycine max HOM05D005692 ORTHO05D006953 2.3e-35 152.1 94 70.2
Glyma.18G151700 Glycine max HOM05D005692 ORTHO05D006953 3.0e-35 151.8 88 73.9
Thecc.09G090700 Theobroma cacao HOM05D005692 ORTHO05D006953 3.0e-35 151.8 91 69.2
TWI32G0831 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 3.0e-35 151.8 92 70.7
CANSAT78G0210 Cannabis sativa HOM05D005692 ORTHO05D006953 3.9e-35 151.4 97 64.9
FvH4_1g07240 Fragaria vesca HOM05D005692 ORTHO05D006953 3.9e-35 151.4 93 69.9
FAN19G2784 Fragaria x ananassa HOM05D005692 ORTHO05D006953 3.9e-35 151.4 93 71.0
FAN26G0193 Fragaria x ananassa HOM05D005692 ORTHO05D006953 3.9e-35 151.4 93 69.9
Psat6g162800 Pisum sativum HOM05D005692 ORTHO05D006953 3.9e-35 151.4 89 74.2
Psat6g183720 Pisum sativum HOM05D005692 ORTHO05D006953 3.9e-35 151.4 89 74.2
Solyc12g008810.2 Solanum lycopersicum HOM05D005692 ORTHO05D006953 3.9e-35 151.4 87 72.4
arahy.Tifrunner.gnm1.ann1.JM0M9B Arachis hypogaea HOM05D005692 ORTHO05D006953 5.1e-35 151.0 99 66.7
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 5.1e-35 151.0 99 66.7
Migut.H00760 Erythranthe guttata HOM05D005692 ORTHO05D006953 5.1e-35 151.0 89 70.8
Migut.H01159 Erythranthe guttata HOM05D005692 ORTHO05D006953 5.1e-35 151.0 89 69.7
Lalb_Chr03g0041061 Lupinus albus HOM05D005692 ORTHO05D006953 5.1e-35 151.0 92 69.6
Phvul.005G056600 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 5.1e-35 151.0 89 70.8
Ca_07409_v3 Cicer arietinum L. HOM05D005692 ORTHO05D006953 6.7e-35 150.6 89 70.8
Phvul.008G136000 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 8.7e-35 150.2 89 70.8
Sed0014309 Sechium edule HOM05D005692 ORTHO05D006953 8.7e-35 150.2 89 71.9
Medtr7g051450 Medicago truncatula HOM05D005692 ORTHO05D006953 1.5e-34 149.4 89 70.8
CiPaw.03G217300 Carya illinoinensis HOM05D005692 ORTHO05D006953 1.9e-34 149.1 91 67.0
RcHm_v2.0_Chr2g0093151 Rosa chinensis HOM05D005692 ORTHO05D006953 1.9e-34 149.1 91 69.2
vmacro06285 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 1.9e-34 149.1 89 67.4
vmacro23428 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 1.9e-34 149.1 89 67.4
AUR62033506 Chenopodium quinoa HOM05D005692 ORTHO05D006953 2.5e-34 148.7 109 62.4
Atru.BG.266.p Acer truncatum HOM05D005692 ORTHO05D006953 3.3e-34 148.3 89 69.7
Psat6g183440 Pisum sativum HOM05D005692 ORTHO05D006953 3.3e-34 148.3 89 73.0
Cc06_g11300 Coffea canephora HOM05D005692 ORTHO05D006953 4.3e-34 147.9 89 70.8
Medtr7g021900 Medicago truncatula HOM05D005692 ORTHO05D006953 4.3e-34 147.9 89 70.8
Nitab4.5_0003152g0130 Nicotiana tabacum HOM05D005692 ORTHO05D006953 4.3e-34 147.9 87 72.4
Lj1g0023726 Lotus japonicus HOM05D005692 ORTHO05D006953 5.6e-34 147.5 89 70.8
Rhsim03G0233100 Rhododendron simsii HOM05D005692 ORTHO05D006953 5.6e-34 147.5 92 63.0
HanXRQChr12g0354791 Helianthus annuus HOM05D005692 ORTHO05D006953 9.6e-34 146.7 94 60.6
Phvul.008G136200 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 9.6e-34 146.7 89 69.7
GSVIVG01015215001 Vitis vinifera HOM05D005692 ORTHO05D006953 9.6e-34 146.7 93 67.7
ECA234G3968 Erigeron canadensis HOM05D005692 ORTHO05D006953 1.6e-33 146.0 89 65.2
Psat6g183640 Pisum sativum HOM05D005692 ORTHO05D006953 2.1e-33 145.6 89 71.9
TAR626G0225 Trochodendron aralioides HOM05D005692 ORTHO05D006953 2.1e-33 145.6 87 72.4
Duzib187G1084 Durio zibethinus HOM05D005692 ORTHO05D006953 2.8e-33 145.2 91 65.9
HanXRQChr10g0319271 Helianthus annuus HOM05D005692 ORTHO05D006953 2.8e-33 145.2 89 65.2
SGA_v2.0_scaffold62G21600 Striga asiatica HOM05D005692 ORTHO05D006953 2.8e-33 145.2 89 70.8
unitig_748.g8121 Utricularia gibba HOM05D005692 ORTHO05D006953 2.8e-33 145.2 89 70.8
FAN23G0510 Fragaria x ananassa HOM05D005692 ORTHO05D006953 4.8e-33 144.4 88 69.3
FAN26G1568 Fragaria x ananassa HOM05D005692 ORTHO05D006953 4.8e-33 144.4 88 69.3
MBI13_g44212_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 6.2e-33 144.1 91 67.0
MBI14_g41836_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 6.2e-33 144.1 91 67.0
FvH4_1g24820 Fragaria vesca HOM05D005692 ORTHO05D006953 8.1e-33 143.7 93 68.8
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 1.1e-32 143.3 99 62.6
SGA_v2.0_scaffold852G53671 Striga asiatica HOM05D005692 ORTHO05D006953 1.8e-32 142.5 89 69.7
Duzib187G0878 Durio zibethinus HOM05D005692 ORTHO05D006953 4.0e-32 141.4 91 67.0
FAN19G0937 Fragaria x ananassa HOM05D005692 ORTHO05D006953 4.0e-32 141.4 84 70.2
PSO210G0626 Papaver somniferum HOM05D005692 ORTHO05D006953 5.3e-32 141.0 85 69.4
PSO210G2337 Papaver somniferum HOM05D005692 ORTHO05D006953 5.3e-32 141.0 85 69.4
VMungo1383G2743 Vigna mungo HOM05D005692 ORTHO05D006953 3.4e-31 138.3 111 57.7
Lsat_1_v5_gn_5_145440 Lactuca sativa HOM05D005692 ORTHO05D006953 4.5e-31 137.9 86 64.0
SGA_v2.0_scaffold33G13431 Striga asiatica HOM05D005692 ORTHO05D006953 7.6e-31 137.1 93 65.6
Nitab4.5_0003079g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 6.5e-30 134.0 78 71.8
Aqoxy4G03142 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 1.9e-29 132.5 85 64.7
Os05g0540200 Oryza sativa ssp. japonica HOM05D005692 ORTHO05D006953 1.9e-29 132.5 88 62.5
ATR0602G199 Amborella trichopoda HOM05D005692 ORTHO05D006953 3.2e-29 131.7 89 64.0
SHI00379 Sapria himalayana HOM05D005692 ORTHO05D006953 3.2e-29 131.7 76 72.4
Peaxi162Scf00354g00223 Petunia axillaris HOM05D005692 ORTHO05D006953 2.7e-28 128.6 85 65.9
Nitab4.5_0000095g0140 Nicotiana tabacum HOM05D005692 ORTHO05D006953 3.0e-27 125.2 98 58.2
Peaxi162Scf00498g00124 Petunia axillaris HOM05D005692 ORTHO05D006953 1.1e-26 123.2 67 77.6
Nitab4.5_0008958g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.1e-25 119.0 74 71.6
Nitab4.5_0004795g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 4.8e-25 117.9 76 68.4
CDE06G0459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 9.0e-24 113.6 77 63.6
Aqoxy1G00378 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 1.3e-22 109.8 85 55.3
CDE06G1459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 3.8e-22 108.2 69 69.6
SHI21206 Sapria himalayana HOM05D005692 ORTHO05D006953 3.8e-22 108.2 62 71.0
TPR.G24304 Trifolium pratense HOM05D005692 ORTHO05D006953 1.0e-19 100.1 205 30.7
Psat0s10921g0080 Pisum sativum HOM05D005692 ORTHO05D006953 2.5e-18 95.5 59 71.2
FAN19G3189 Fragaria x ananassa HOM05D005692 ORTHO05D006953 3.7e-17 91.7 72 58.3
SGA_v2.0_scaffold33G13433 Striga asiatica HOM05D000524 ORTHO05D000381 3.7e-17 91.7 59 71.2
Mapoly0063s0096 Marchantia polymorpha HOM05D005692 ORTHO05D006953 3.8e-14 81.6 91 40.7
CBR_g36562 Chara braunii HOM05D005692 ORTHO05D006953 1.9e-13 79.3 68 47.1
Zm00001eb294300 Zea mays HOM05D005692 ORTHO05D006953 2.3e-11 72.4 59 54.2
Haze_25902 Corylus avellana HOM05D001256 ORTHO05D001141 2.4e-08 62.4 38 60.5
Pp3c13_20310 Physcomitrium patens HOM05D005692 ORTHO05D006953 7.7e-07 57.4 57 42.1


User provided reference genes

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